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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15006 and 15007 are separated by 1116 nucleotides
15007 and 15008 are separated by 671 nucleotides
15008 and 15009 are separated by 651 nucleotides
15009 and 15010 are separated by 199 nucleotides
mRNA_6638: 15006 - K02575 NRT, narK, nrtP, nasA MFS transporter, NNP family, nitrate/nitrite transporter, at 1,314,134 to 1,316,580
15006
mRNA_6639: 15007 - K00362 nirB nitrite reductase (NADH) large subunit, at 1,317,697 to 1,321,815
15007
mRNA_6640: 15008 - K10534 NR nitrate reductase (NAD(P)H), at 1,322,487 to 1,325,707
15008
mRNA_6641: 15009 - K11863 ATXN3, MJD Ataxin-3, at 1,326,359 to 1,327,984
15009
mRNA_6642: 15010 - KOG2684 Sirtuin 5 and related class III sirtuins (SIR2 family), at 1,328,184 to 1,330,070
15010
Group
Condition
mRNA
_6638
mRNA
_6639
mRNA
_6640
mRNA
_6641
mRNA
_6642
15006
15007
15008
15009
15010
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.0
-0.3
-0.4
-0.5
-0.6
auxotrophy
YNB Glucose
-0.3
+0.2
+0.1
-0.2
-0.7
auxotrophy
Dropout Complete
-0.8
+0.4
+0.2
-0.1
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.9
+0.1
+0.3
-0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
-0.0
+0.0
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.2
+0.0
-0.3
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.2
+0.1
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.2
-0.1
-0.4
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.2
-0.1
+0.0
-0.3
growth on oleic acid
YNB Glucose
-0.3
+0.0
-0.0
+0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.3
+0.3
-0.3
-0.2
growth on ypd
YPD
+0.3
-0.1
-0.0
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.1
+0.1
-0.1
-0.0
growth on ricinoleic acid
YNB Glucose
-0.0
+0.1
+0.3
-0.3
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.1
+0.2
-0.5
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.0
+0.1
+0.3
-0.0
growth on oleic acid
YNB Oleic Acid
-0.0
+0.0
+0.1
+0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.0
-0.0
+0.4
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.1
+0.0
+0.2
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.3
-0.0
+0.8
+0.5
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.2
+0.0
+0.8
+0.4
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