Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 15007 and 15008 are separated by 671 nucleotides15008 and 15009 are separated by 651 nucleotides15009 and 15010 are separated by 199 nucleotides15010 and 15011 are separated by 204 nucleotides mRNA_6639: 15007 - K00362 nirB nitrite reductase (NADH) large subunit, at 1,317,697 to 1,321,815 15007 mRNA_6640: 15008 - K10534 NR nitrate reductase (NAD(P)H), at 1,322,487 to 1,325,707 15008 mRNA_6641: 15009 - K11863 ATXN3, MJD Ataxin-3, at 1,326,359 to 1,327,984 15009 mRNA_6642: 15010 - KOG2684 Sirtuin 5 and related class III sirtuins (SIR2 family), at 1,328,184 to 1,330,070 15010 mRNA_6643: 15011 - KOG2983 Uncharacterized conserved protein, at 1,330,275 to 1,331,625 15011
Group Condition mRNA_6639 mRNA_6640 mRNA_6641 mRNA_6642 mRNA_6643
15007 15008 15009 15010 15011
facs on lipid accumulation Sorted Low BODIPY Gate -0.3 -0.4 -0.5 -0.6 N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.2 -0.1 -0.4 -0.0 N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.2 -0.1 +0.0 -0.3 N.D.
auxotrophy YNB Glucose +0.2 +0.1 -0.2 -0.7 N.D.
auxotrophy YNB Glucose 75mM Arginine +0.2 +0.0 -0.3 -0.4 N.D.
growth on ypd YPD -0.1 -0.0 -0.4 +0.1 N.D.
auxotrophy YNB Glucose 75mM Methionine +0.2 +0.1 -0.2 -0.3 N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1 +0.1 -0.1 -0.0 N.D.
facs on lipid accumulation Sorted No BODIPY Gate -0.0 +0.0 +0.1 -0.1 N.D.
facs on lipid accumulation Sorted High BODIPY Gate +0.1 +0.2 -0.5 +0.1 N.D.
growth on oleic acid YNB Glucose +0.0 -0.0 +0.1 -0.1 N.D.
growth on ricinoleic acid YNB Glucose +0.1 +0.3 -0.3 -0.1 N.D.
auxotrophy Dropout Complete +0.4 +0.2 -0.1 -0.4 N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid +0.3 +0.3 -0.3 -0.2 N.D.
growth on ricinoleic acid YNB Ricinoleic Acid +0.1 +0.3 -0.2 +0.1 N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.1 +0.0 +0.2 +0.1 N.D.
growth on oleic acid YNB Oleic Acid +0.0 +0.1 +0.1 +0.1 N.D.
ypd buoyancy 40 hrs Median Buoyancy -0.0 +0.1 +0.3 -0.0 N.D.
ypd buoyancy 40 hrs Low Buoyancy +0.0 -0.0 +0.4 +0.0 N.D.
ypd buoyancy 40 hrs No Buoyancy Separation -0.3 -0.0 +0.8 +0.5 N.D.
ypd buoyancy 40 hrs High Buoyancy +0.2 +0.0 +0.8 +0.4 N.D.
remove
mRNA_6639
plot
remove
mRNA_6640
plot
remove
mRNA_6641
remove
mRNA_6642
plot
remove
mRNA_6643
plot