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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15007 and 15008 are separated by 671 nucleotides
15008 and 15009 are separated by 651 nucleotides
15009 and 15010 are separated by 199 nucleotides
15010 and 15011 are separated by 204 nucleotides
mRNA_6639: 15007 - K00362 nirB nitrite reductase (NADH) large subunit, at 1,317,697 to 1,321,815
15007
mRNA_6640: 15008 - K10534 NR nitrate reductase (NAD(P)H), at 1,322,487 to 1,325,707
15008
mRNA_6641: 15009 - K11863 ATXN3, MJD Ataxin-3, at 1,326,359 to 1,327,984
15009
mRNA_6642: 15010 - KOG2684 Sirtuin 5 and related class III sirtuins (SIR2 family), at 1,328,184 to 1,330,070
15010
mRNA_6643: 15011 - KOG2983 Uncharacterized conserved protein, at 1,330,275 to 1,331,625
15011
Group
Condition
mRNA
_6639
mRNA
_6640
mRNA
_6641
mRNA
_6642
mRNA
_6643
15007
15008
15009
15010
15011
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.4
-0.5
-0.6
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.1
-0.4
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.1
+0.0
-0.3
N.D.
auxotrophy
YNB Glucose
+0.2
+0.1
-0.2
-0.7
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.0
-0.3
-0.4
N.D.
growth on ypd
YPD
-0.1
-0.0
-0.4
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.1
-0.2
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.1
-0.1
-0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.0
+0.1
-0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.2
-0.5
+0.1
N.D.
growth on oleic acid
YNB Glucose
+0.0
-0.0
+0.1
-0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
+0.3
-0.3
-0.1
N.D.
auxotrophy
Dropout Complete
+0.4
+0.2
-0.1
-0.4
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.3
-0.3
-0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.3
-0.2
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.0
+0.2
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
+0.0
+0.1
+0.1
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.1
+0.3
-0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.0
+0.4
+0.0
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.0
+0.8
+0.5
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.0
+0.8
+0.4
N.D.
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