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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15008 and 15009 are separated by 651 nucleotides
15009 and 15010 are separated by 199 nucleotides
15010 and 15011 are separated by 204 nucleotides
15011 and 15012 are separated by 408 nucleotides
mRNA_6640: 15008 - K10534 NR nitrate reductase (NAD(P)H), at 1,322,487 to 1,325,707
15008
mRNA_6641: 15009 - K11863 ATXN3, MJD Ataxin-3, at 1,326,359 to 1,327,984
15009
mRNA_6642: 15010 - KOG2684 Sirtuin 5 and related class III sirtuins (SIR2 family), at 1,328,184 to 1,330,070
15010
mRNA_6643: 15011 - KOG2983 Uncharacterized conserved protein, at 1,330,275 to 1,331,625
15011
mRNA_6644: 15012 - HMMPfam-Permease for cytosine/purines, uracil, thiamine, allantoin-PF02133,PIRSF--PIRSF002744, at 1,332,034 to 1,334,144
15012
Group
Condition
mRNA
_6640
mRNA
_6641
mRNA
_6642
mRNA
_6643
mRNA
_6644
15008
15009
15010
15011
15012
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.5
-0.6
N.D.
-0.5
auxotrophy
YNB Glucose
+0.1
-0.2
-0.7
N.D.
-0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.3
-0.4
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.2
-0.3
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.4
-0.0
N.D.
-0.1
auxotrophy
Dropout Complete
+0.2
-0.1
-0.4
N.D.
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.5
+0.1
N.D.
-0.4
growth on ypd
YPD
-0.0
-0.4
+0.1
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
+0.3
-0.3
-0.1
N.D.
-0.3
growth on oleic acid
YNB Glucose
-0.0
+0.1
-0.1
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.0
-0.3
N.D.
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.1
-0.1
N.D.
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.3
-0.2
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.2
+0.1
N.D.
-0.2
growth on oleic acid
YNB Oleic Acid
+0.1
+0.1
+0.1
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.1
-0.0
N.D.
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.4
+0.0
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.3
-0.0
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.2
+0.1
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.8
+0.4
N.D.
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.8
+0.5
N.D.
+0.3
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