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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15017 and 15018 are separated by 612 nucleotides
15018 and 15019 are separated by 461 nucleotides
15019 and 15020 are separated by 1713 nucleotides
15020 and 15021 are separated by 1033 nucleotides
mRNA_6649: 15017 - K12580 CNOT3, NOT3 CCR4-NOT transcription complex subunit 3, at 1,344,681 to 1,347,468
15017
mRNA_6650: 15018 - HMMPfam-Domain of unknown function (DUF1772)-PF08592, at 1,348,081 to 1,348,867
15018
mRNA_6651: 15019 - K20793 NAA50, NAT5 N-alpha-acetyltransferase 50, at 1,349,329 to 1,350,495
15019
mRNA_6652: 15020 - K02975 RP-S25e, RPS25 small subunit ribosomal protein S25e, at 1,352,209 to 1,353,144
15020
mRNA_6653: 15021 - K04739 PRKAR cAMP-dependent protein kinase regulator, at 1,354,178 to 1,355,889
15021
Group
Condition
mRNA
_6649
mRNA
_6650
mRNA
_6651
mRNA
_6652
mRNA
_6653
15017
15018
15019
15020
15021
facs on lipid accumulation
Sorted Low BODIPY Gate
-3.2
+0.3
+0.3
-0.9
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-3.6
+0.3
+0.4
-0.5
N.D.
growth on ricinoleic acid
YNB Glucose
-2.7
+0.1
+0.3
-0.7
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-1.9
-0.0
-0.1
-1.0
N.D.
auxotrophy
YNB Glucose
-2.4
+0.0
+0.4
-0.7
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-1.2
+0.1
+0.1
-1.4
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.9
-0.2
-0.0
-0.4
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.8
+0.1
+0.1
-0.2
N.D.
auxotrophy
Dropout Complete
+0.4
-0.2
-0.3
-1.6
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.2
-0.3
-1.2
N.D.
growth on oleic acid
YNB Oleic Acid
-0.5
+0.0
-0.5
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.2
+0.1
-0.7
N.D.
growth on oleic acid
YNB Glucose
+0.2
+0.2
-0.1
-0.4
N.D.
ypd buoyancy
40 hrs High Buoyancy
+1.5
-0.5
+0.1
-1.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.1
-0.1
-0.0
-0.9
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.6
-0.3
+0.2
-0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+1.4
-0.1
+0.2
-1.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.2
+0.4
-0.4
-0.6
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.9
+0.1
+0.2
-0.5
N.D.
growth on ypd
YPD
-0.2
+0.2
-0.1
+0.9
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.8
+0.2
+0.1
+0.3
N.D.
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