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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15019 and 15020 are separated by 1713 nucleotides
15020 and 15021 are separated by 1033 nucleotides
15021 and 15022 are separated by 278 nucleotides
15022 and 15023 are separated by 1383 nucleotides
mRNA_6651: 15019 - K20793 NAA50, NAT5 N-alpha-acetyltransferase 50, at 1,349,329 to 1,350,495
15019
mRNA_6652: 15020 - K02975 RP-S25e, RPS25 small subunit ribosomal protein S25e, at 1,352,209 to 1,353,144
15020
mRNA_6653: 15021 - K04739 PRKAR cAMP-dependent protein kinase regulator, at 1,354,178 to 1,355,889
15021
mRNA_6654: 15022 - K12462 ARHGDI, RHOGDI Rho GDP-dissociation inhibitor, at 1,356,168 to 1,357,307
15022
mRNA_6655: 15023 - Interpro Domain of unknown function (DUF1772), at 1,358,691 to 1,359,757
15023
Group
Condition
mRNA
_6651
mRNA
_6652
mRNA
_6653
mRNA
_6654
mRNA
_6655
15019
15020
15021
15022
15023
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-1.2
N.D.
-0.4
+0.2
auxotrophy
Dropout Complete
-0.3
-1.6
N.D.
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.9
N.D.
-0.8
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-1.0
N.D.
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
-0.6
N.D.
-0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.9
N.D.
-0.4
-0.2
growth on ricinoleic acid
YNB Glucose
+0.3
-0.7
N.D.
-0.6
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-1.4
N.D.
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.7
N.D.
-0.4
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.4
N.D.
-0.4
+0.1
auxotrophy
YNB Glucose
+0.4
-0.7
N.D.
-0.4
+0.1
growth on oleic acid
YNB Oleic Acid
-0.5
-0.2
N.D.
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.5
N.D.
-0.5
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-1.1
N.D.
+0.4
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
-1.0
N.D.
+0.4
+0.2
growth on oleic acid
YNB Glucose
-0.1
-0.4
N.D.
+0.3
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.5
N.D.
+0.2
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.2
N.D.
+0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.2
N.D.
+0.4
+0.0
growth on ypd
YPD
-0.1
+0.9
N.D.
-0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.3
N.D.
+0.4
-0.0
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