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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15020 and 15021 are separated by 1033 nucleotides
15021 and 15022 are separated by 278 nucleotides
15022 and 15023 are separated by 1383 nucleotides
15023 and 15024 are separated by 362 nucleotides
mRNA_6652: 15020 - K02975 RP-S25e, RPS25 small subunit ribosomal protein S25e, at 1,352,209 to 1,353,144
15020
mRNA_6653: 15021 - K04739 PRKAR cAMP-dependent protein kinase regulator, at 1,354,178 to 1,355,889
15021
mRNA_6654: 15022 - K12462 ARHGDI, RHOGDI Rho GDP-dissociation inhibitor, at 1,356,168 to 1,357,307
15022
mRNA_6655: 15023 - Interpro Domain of unknown function (DUF1772), at 1,358,691 to 1,359,757
15023
mRNA_6656: 15024 - KOG1674 Cyclin, at 1,360,120 to 1,362,447
15024
Group
Condition
mRNA
_6652
mRNA
_6653
mRNA
_6654
mRNA
_6655
mRNA
_6656
15020
15021
15022
15023
15024
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
N.D.
-0.4
-0.2
-1.3
growth on ricinoleic acid
YNB Glucose
-0.7
N.D.
-0.6
-0.1
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-1.0
N.D.
-0.2
-0.1
-0.5
auxotrophy
YNB Glucose
-0.7
N.D.
-0.4
+0.1
-0.6
auxotrophy
YNB Glucose 75mM Arginine
-1.4
N.D.
+0.2
+0.2
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.9
N.D.
-0.8
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.2
N.D.
-0.4
+0.2
+0.2
auxotrophy
Dropout Complete
-1.6
N.D.
+0.1
+0.1
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-1.1
N.D.
+0.4
+0.0
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.7
N.D.
-0.4
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
N.D.
-0.2
-0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
-1.0
N.D.
+0.4
+0.2
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
N.D.
-0.4
+0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
N.D.
+0.4
-0.0
-1.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
N.D.
+0.2
+0.2
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
N.D.
-0.5
+0.3
+0.4
growth on oleic acid
YNB Glucose
-0.4
N.D.
+0.3
-0.0
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.2
N.D.
+0.4
+0.0
-0.2
growth on ypd
YPD
+0.9
N.D.
-0.1
-0.1
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
N.D.
+0.1
+0.2
+0.2
growth on oleic acid
YNB Oleic Acid
-0.2
N.D.
+0.2
+0.1
+0.6
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