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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15022 and 15023 are separated by 1383 nucleotides
15023 and 15024 are separated by 362 nucleotides
15024 and 15025 are separated by 1056 nucleotides
15025 and 15026 are separated by 160 nucleotides
mRNA_6654: 15022 - K12462 ARHGDI, RHOGDI Rho GDP-dissociation inhibitor, at 1,356,168 to 1,357,307
15022
mRNA_6655: 15023 - Interpro Domain of unknown function (DUF1772), at 1,358,691 to 1,359,757
15023
mRNA_6656: 15024 - KOG1674 Cyclin, at 1,360,120 to 1,362,447
15024
mRNA_6657: 15025 - K16302 CNNM metal transporter CNNM, at 1,363,504 to 1,366,738
15025
mRNA_6658: 15026 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,ProSiteProfiles-4Fe-4S ferredoxin-type iron-sulfur binding domain profile.-PS51379,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 1,366,899 to 1,370,407
15026
Group
Condition
mRNA
_6654
mRNA
_6655
mRNA
_6656
mRNA
_6657
mRNA
_6658
15022
15023
15024
15025
15026
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.2
-1.3
-0.1
-0.8
growth on ricinoleic acid
YNB Glucose
-0.6
-0.1
-0.5
+0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-0.0
-1.2
+0.0
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.1
-0.5
-0.2
-0.2
growth on ypd
YPD
-0.1
-0.1
-0.5
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.8
+0.1
+0.2
+0.3
-0.6
auxotrophy
YNB Glucose
-0.4
+0.1
-0.6
+0.2
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.4
+0.0
-0.4
-0.0
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
+0.3
+0.4
+0.2
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.1
-0.1
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.1
-0.0
+0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.2
-0.4
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
+0.2
+0.2
+0.2
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.2
-0.4
+0.0
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.4
+0.0
-0.2
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.2
-0.4
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.1
-0.1
+0.3
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.2
+0.2
+0.1
+0.0
growth on oleic acid
YNB Glucose
+0.3
-0.0
+0.0
+0.2
+0.3
auxotrophy
Dropout Complete
+0.1
+0.1
+0.3
+0.3
+0.3
growth on oleic acid
YNB Oleic Acid
+0.2
+0.1
+0.6
+0.2
+0.2
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