Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 15023 and 15024 are separated by 362 nucleotides15024 and 15025 are separated by 1056 nucleotides15025 and 15026 are separated by 160 nucleotides15026 and 15027 are separated by 285 nucleotides mRNA_6655: 15023 - Interpro Domain of unknown function (DUF1772), at 1,358,691 to 1,359,757 15023 mRNA_6656: 15024 - KOG1674 Cyclin, at 1,360,120 to 1,362,447 15024 mRNA_6657: 15025 - K16302 CNNM metal transporter CNNM, at 1,363,504 to 1,366,738 15025 mRNA_6658: 15026 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,ProSiteProfiles-4Fe-4S ferredoxin-type iron-sulfur binding domain profile.-PS51379,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 1,366,899 to 1,370,407 15026 mRNA_6659: 15027 - K05663 ABC.ATM mitochondrial ABC transporter ATM, at 1,370,693 to 1,373,174 15027
Group Condition mRNA_6655 mRNA_6656 mRNA_6657 mRNA_6658 mRNA_6659
15023 15024 15025 15026 15027
facs on lipid accumulation Sorted Low BODIPY Gate -0.2 -1.3 -0.1 -0.8 N.D.
ypd buoyancy 40 hrs No Buoyancy Separation -0.0 -1.2 +0.0 -0.4 N.D.
facs on lipid accumulation Sorted High BODIPY Gate -0.1 -0.5 -0.2 -0.2 N.D.
growth on ypd YPD -0.1 -0.5 -0.1 -0.1 N.D.
ypd buoyancy 40 hrs Median Buoyancy +0.0 -0.4 -0.0 -0.3 N.D.
growth on ricinoleic acid YNB Glucose -0.1 -0.5 +0.0 -0.1 N.D.
ypd buoyancy 40 hrs High Buoyancy +0.2 -0.4 +0.0 -0.2 N.D.
facs on lipid accumulation Sorted No BODIPY Gate +0.2 -0.4 -0.1 +0.1 N.D.
ypd buoyancy 40 hrs Low Buoyancy +0.0 -0.2 -0.0 +0.1 N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.1 +0.2 +0.3 -0.6 N.D.
auxotrophy YNB Glucose +0.1 -0.6 +0.2 +0.3 N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1 -0.0 +0.2 -0.1 N.D.
auxotrophy YNB Glucose 75mM Arginine +0.2 -0.4 +0.2 +0.2 N.D.
growth on ricinoleic acid YNB Ricinoleic Acid +0.1 -0.1 -0.0 +0.2 N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.3 +0.4 +0.2 -0.5 N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.2 +0.2 +0.2 -0.3 N.D.
growth on oleic acid YNB Glucose -0.0 +0.0 +0.2 +0.3 N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid +0.2 +0.2 +0.1 +0.0 N.D.
auxotrophy YNB Glucose 75mM Methionine +0.1 -0.1 +0.3 +0.4 N.D.
auxotrophy Dropout Complete +0.1 +0.3 +0.3 +0.3 N.D.
growth on oleic acid YNB Oleic Acid +0.1 +0.6 +0.2 +0.2 N.D.
remove
mRNA_6655
plot
remove
mRNA_6656
plot
remove
mRNA_6657
remove
mRNA_6658
plot
remove
mRNA_6659
plot