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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15024 and 15025 are separated by 1056 nucleotides
15025 and 15026 are separated by 160 nucleotides
15026 and 15027 are separated by 285 nucleotides
15027 and 15028 are separated by 691 nucleotides
mRNA_6656: 15024 - KOG1674 Cyclin, at 1,360,120 to 1,362,447
15024
mRNA_6657: 15025 - K16302 CNNM metal transporter CNNM, at 1,363,504 to 1,366,738
15025
mRNA_6658: 15026 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,ProSiteProfiles-4Fe-4S ferredoxin-type iron-sulfur binding domain profile.-PS51379,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 1,366,899 to 1,370,407
15026
mRNA_6659: 15027 - K05663 ABC.ATM mitochondrial ABC transporter ATM, at 1,370,693 to 1,373,174
15027
mRNA_6660: 15028 - KOG1342 Histone deacetylase complex, catalytic component RPD3, at 1,373,866 to 1,375,485
15028
Group
Condition
mRNA
_6656
mRNA
_6657
mRNA
_6658
mRNA
_6659
mRNA
_6660
15024
15025
15026
15027
15028
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.3
-0.1
-0.8
N.D.
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-1.2
+0.0
-0.4
N.D.
-0.6
growth on ypd
YPD
-0.5
-0.1
-0.1
N.D.
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.2
-0.2
N.D.
+0.0
growth on ricinoleic acid
YNB Glucose
-0.5
+0.0
-0.1
N.D.
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.4
-0.0
-0.3
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.4
+0.0
-0.2
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.3
-0.6
N.D.
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.0
+0.1
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.2
+0.2
N.D.
-0.2
auxotrophy
YNB Glucose
-0.6
+0.2
+0.3
N.D.
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.0
+0.2
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.2
-0.5
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.2
-0.3
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.2
-0.1
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
-0.1
+0.1
N.D.
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.1
+0.0
N.D.
+0.0
growth on oleic acid
YNB Glucose
+0.0
+0.2
+0.3
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.3
+0.4
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
+0.6
+0.2
+0.2
N.D.
-0.1
auxotrophy
Dropout Complete
+0.3
+0.3
+0.3
N.D.
+0.2
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