Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 15024 and 15025 are separated by 1056 nucleotides15025 and 15026 are separated by 160 nucleotides15026 and 15027 are separated by 285 nucleotides15027 and 15028 are separated by 691 nucleotides mRNA_6656: 15024 - KOG1674 Cyclin, at 1,360,120 to 1,362,447 15024 mRNA_6657: 15025 - K16302 CNNM metal transporter CNNM, at 1,363,504 to 1,366,738 15025 mRNA_6658: 15026 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,ProSiteProfiles-4Fe-4S ferredoxin-type iron-sulfur binding domain profile.-PS51379,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 1,366,899 to 1,370,407 15026 mRNA_6659: 15027 - K05663 ABC.ATM mitochondrial ABC transporter ATM, at 1,370,693 to 1,373,174 15027 mRNA_6660: 15028 - KOG1342 Histone deacetylase complex, catalytic component RPD3, at 1,373,866 to 1,375,485 15028
Group Condition mRNA_6656 mRNA_6657 mRNA_6658 mRNA_6659 mRNA_6660
15024 15025 15026 15027 15028
facs on lipid accumulation Sorted Low BODIPY Gate -1.3 -0.1 -0.8 N.D. -0.1
ypd buoyancy 40 hrs No Buoyancy Separation -1.2 +0.0 -0.4 N.D. -0.6
growth on ypd YPD -0.5 -0.1 -0.1 N.D. -0.6
facs on lipid accumulation Sorted High BODIPY Gate -0.5 -0.2 -0.2 N.D. +0.0
growth on ricinoleic acid YNB Glucose -0.5 +0.0 -0.1 N.D. -0.2
ypd buoyancy 40 hrs Median Buoyancy -0.4 -0.0 -0.3 N.D. +0.1
ypd buoyancy 40 hrs High Buoyancy -0.4 +0.0 -0.2 N.D. +0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.2 +0.3 -0.6 N.D. -0.2
ypd buoyancy 40 hrs Low Buoyancy -0.2 -0.0 +0.1 N.D. -0.0
auxotrophy YNB Glucose 75mM Arginine -0.4 +0.2 +0.2 N.D. -0.2
auxotrophy YNB Glucose -0.6 +0.2 +0.3 N.D. -0.0
growth on ricinoleic acid YNB Ricinoleic Acid -0.1 -0.0 +0.2 N.D. -0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.4 +0.2 -0.5 N.D. -0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.2 +0.2 -0.3 N.D. -0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.0 +0.2 -0.1 N.D. -0.1
facs on lipid accumulation Sorted No BODIPY Gate -0.4 -0.1 +0.1 N.D. +0.6
growth on ricinoleic acid YNB Methylricinoleic Acid +0.2 +0.1 +0.0 N.D. +0.0
growth on oleic acid YNB Glucose +0.0 +0.2 +0.3 N.D. -0.2
auxotrophy YNB Glucose 75mM Methionine -0.1 +0.3 +0.4 N.D. -0.1
growth on oleic acid YNB Oleic Acid +0.6 +0.2 +0.2 N.D. -0.1
auxotrophy Dropout Complete +0.3 +0.3 +0.3 N.D. +0.2
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