Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 15026 and 15027 are separated by 285 nucleotides15027 and 15028 are separated by 691 nucleotides15028 and 15029 are separated by 69 nucleotides15029 and 15030 are separated by 1441 nucleotides mRNA_6658: 15026 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,ProSiteProfiles-4Fe-4S ferredoxin-type iron-sulfur binding domain profile.-PS51379,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 1,366,899 to 1,370,407 15026 mRNA_6659: 15027 - K05663 ABC.ATM mitochondrial ABC transporter ATM, at 1,370,693 to 1,373,174 15027 mRNA_6660: 15028 - KOG1342 Histone deacetylase complex, catalytic component RPD3, at 1,373,866 to 1,375,485 15028 mRNA_6661: 15029 - K11699 RDR, RDRP RNA-dependent RNA polymerase, at 1,375,555 to 1,377,901 15029 mRNA_6662: 15030 - HMMPfam-G-patch domain-PF01585,HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-G-patch domain profile.-PS50174,SMART-RNA recognition motif-SM00360,SMART-glycine rich nucleic binding domain-SM00443,SUPERFAMILY--SSF54928, at 1,379,343 to 1,382,272 15030
Group Condition mRNA_6658 mRNA_6659 mRNA_6660 mRNA_6661 mRNA_6662
15026 15027 15028 15029 15030
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.3 N.D. -0.1 -0.1 -2.3
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.6 N.D. -0.2 +0.0 -1.7
facs on lipid accumulation Sorted Low BODIPY Gate -0.8 N.D. -0.1 -0.1 -0.5
growth on ricinoleic acid YNB Ricinoleic Acid +0.2 N.D. -0.2 -0.1 -1.3
facs on lipid accumulation Sorted High BODIPY Gate -0.2 N.D. +0.0 +0.2 -1.3
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.5 N.D. -0.1 -0.4 -0.2
growth on ypd YPD -0.1 N.D. -0.6 -0.1 -0.2
growth on ricinoleic acid YNB Glucose -0.1 N.D. -0.2 +0.1 -0.7
ypd buoyancy 40 hrs Median Buoyancy -0.3 N.D. +0.1 -0.0 -0.5
ypd buoyancy 40 hrs No Buoyancy Separation -0.4 N.D. -0.6 +0.2 +0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1 N.D. -0.1 +0.2 -0.5
ypd buoyancy 40 hrs High Buoyancy -0.2 N.D. +0.1 -0.1 -0.3
growth on ricinoleic acid YNB Methylricinoleic Acid +0.0 N.D. +0.0 -0.1 -0.2
auxotrophy YNB Glucose 75mM Arginine +0.2 N.D. -0.2 +0.2 -0.5
auxotrophy YNB Glucose 75mM Methionine +0.4 N.D. -0.1 +0.1 -0.5
facs on lipid accumulation Sorted No BODIPY Gate +0.1 N.D. +0.6 +0.0 -0.7
growth on oleic acid YNB Glucose +0.3 N.D. -0.2 -0.0 +0.1
auxotrophy YNB Glucose +0.3 N.D. -0.0 +0.4 -0.3
growth on oleic acid YNB Oleic Acid +0.2 N.D. -0.1 -0.0 +0.3
auxotrophy Dropout Complete +0.3 N.D. +0.2 +0.3 -0.3
ypd buoyancy 40 hrs Low Buoyancy +0.1 N.D. -0.0 +0.0 +0.5
remove
mRNA_6658
plot
remove
mRNA_6659
plot
remove
mRNA_6660
remove
mRNA_6661
plot
remove
mRNA_6662
plot