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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15026 and 15027 are separated by 285 nucleotides
15027 and 15028 are separated by 691 nucleotides
15028 and 15029 are separated by 69 nucleotides
15029 and 15030 are separated by 1441 nucleotides
mRNA_6658: 15026 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,ProSiteProfiles-4Fe-4S ferredoxin-type iron-sulfur binding domain profile.-PS51379,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 1,366,899 to 1,370,407
15026
mRNA_6659: 15027 - K05663 ABC.ATM mitochondrial ABC transporter ATM, at 1,370,693 to 1,373,174
15027
mRNA_6660: 15028 - KOG1342 Histone deacetylase complex, catalytic component RPD3, at 1,373,866 to 1,375,485
15028
mRNA_6661: 15029 - K11699 RDR, RDRP RNA-dependent RNA polymerase, at 1,375,555 to 1,377,901
15029
mRNA_6662: 15030 - HMMPfam-G-patch domain-PF01585,HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-G-patch domain profile.-PS50174,SMART-RNA recognition motif-SM00360,SMART-glycine rich nucleic binding domain-SM00443,SUPERFAMILY--SSF54928, at 1,379,343 to 1,382,272
15030
Group
Condition
mRNA
_6658
mRNA
_6659
mRNA
_6660
mRNA
_6661
mRNA
_6662
15026
15027
15028
15029
15030
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
N.D.
-0.1
-0.1
-2.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
N.D.
-0.2
+0.0
-1.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.8
N.D.
-0.1
-0.1
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
N.D.
-0.2
-0.1
-1.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
N.D.
+0.0
+0.2
-1.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
N.D.
-0.1
-0.4
-0.2
growth on ypd
YPD
-0.1
N.D.
-0.6
-0.1
-0.2
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
-0.2
+0.1
-0.7
ypd buoyancy
40 hrs Median Buoyancy
-0.3
N.D.
+0.1
-0.0
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
N.D.
-0.6
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
N.D.
-0.1
+0.2
-0.5
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
+0.1
-0.1
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
N.D.
+0.0
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.2
N.D.
-0.2
+0.2
-0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.4
N.D.
-0.1
+0.1
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
+0.6
+0.0
-0.7
growth on oleic acid
YNB Glucose
+0.3
N.D.
-0.2
-0.0
+0.1
auxotrophy
YNB Glucose
+0.3
N.D.
-0.0
+0.4
-0.3
growth on oleic acid
YNB Oleic Acid
+0.2
N.D.
-0.1
-0.0
+0.3
auxotrophy
Dropout Complete
+0.3
N.D.
+0.2
+0.3
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
-0.0
+0.0
+0.5
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