Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 15027 and 15028 are separated by 691 nucleotides15028 and 15029 are separated by 69 nucleotides15029 and 15030 are separated by 1441 nucleotides15030 and 15031 are separated by 456 nucleotides mRNA_6659: 15027 - K05663 ABC.ATM mitochondrial ABC transporter ATM, at 1,370,693 to 1,373,174 15027 mRNA_6660: 15028 - KOG1342 Histone deacetylase complex, catalytic component RPD3, at 1,373,866 to 1,375,485 15028 mRNA_6661: 15029 - K11699 RDR, RDRP RNA-dependent RNA polymerase, at 1,375,555 to 1,377,901 15029 mRNA_6662: 15030 - HMMPfam-G-patch domain-PF01585,HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-G-patch domain profile.-PS50174,SMART-RNA recognition motif-SM00360,SMART-glycine rich nucleic binding domain-SM00443,SUPERFAMILY--SSF54928, at 1,379,343 to 1,382,272 15030 mRNA_6663: 15031 - Hypothetical Protein, at 1,382,729 to 1,383,844 15031
Group Condition mRNA_6659 mRNA_6660 mRNA_6661 mRNA_6662 mRNA_6663
15027 15028 15029 15030 15031
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation N.D. -0.1 -0.1 -2.3 +0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy N.D. -0.2 +0.0 -1.7 -0.3
growth on ricinoleic acid YNB Ricinoleic Acid N.D. -0.2 -0.1 -1.3 +0.1
facs on lipid accumulation Sorted High BODIPY Gate N.D. +0.0 +0.2 -1.3 -0.4
facs on lipid accumulation Sorted Low BODIPY Gate N.D. -0.1 -0.1 -0.5 -0.0
buoyancy on lipid accumulation 40 hrs Median Buoyancy N.D. -0.1 -0.4 -0.2 -0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy N.D. -0.1 +0.2 -0.5 -0.2
growth on ricinoleic acid YNB Glucose N.D. -0.2 +0.1 -0.7 +0.1
growth on ypd YPD N.D. -0.6 -0.1 -0.2 +0.4
auxotrophy YNB Glucose 75mM Methionine N.D. -0.1 +0.1 -0.5 -0.1
facs on lipid accumulation Sorted No BODIPY Gate N.D. +0.6 +0.0 -0.7 -0.4
ypd buoyancy 40 hrs No Buoyancy Separation N.D. -0.6 +0.2 +0.2 +0.0
auxotrophy YNB Glucose 75mM Arginine N.D. -0.2 +0.2 -0.5 +0.2
ypd buoyancy 40 hrs Median Buoyancy N.D. +0.1 -0.0 -0.5 +0.3
auxotrophy YNB Glucose N.D. -0.0 +0.4 -0.3 +0.0
growth on ricinoleic acid YNB Methylricinoleic Acid N.D. +0.0 -0.1 -0.2 +0.3
ypd buoyancy 40 hrs High Buoyancy N.D. +0.1 -0.1 -0.3 +0.4
growth on oleic acid YNB Glucose N.D. -0.2 -0.0 +0.1 +0.3
growth on oleic acid YNB Oleic Acid N.D. -0.1 -0.0 +0.3 +0.1
auxotrophy Dropout Complete N.D. +0.2 +0.3 -0.3 +0.3
ypd buoyancy 40 hrs Low Buoyancy N.D. -0.0 +0.0 +0.5 +0.6
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