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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15028 and 15029 are separated by 69 nucleotides
15029 and 15030 are separated by 1441 nucleotides
15030 and 15031 are separated by 456 nucleotides
15031 and 15032 are separated by 186 nucleotides
mRNA_6660: 15028 - KOG1342 Histone deacetylase complex, catalytic component RPD3, at 1,373,866 to 1,375,485
15028
mRNA_6661: 15029 - K11699 RDR, RDRP RNA-dependent RNA polymerase, at 1,375,555 to 1,377,901
15029
mRNA_6662: 15030 - HMMPfam-G-patch domain-PF01585,HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-G-patch domain profile.-PS50174,SMART-RNA recognition motif-SM00360,SMART-glycine rich nucleic binding domain-SM00443,SUPERFAMILY--SSF54928, at 1,379,343 to 1,382,272
15030
mRNA_6663: 15031 - Hypothetical Protein, at 1,382,729 to 1,383,844
15031
mRNA_6664: 15032 - K03165 TOP3 DNA topoisomerase III, at 1,384,031 to 1,388,134
15032
Group
Condition
mRNA
_6660
mRNA
_6661
mRNA
_6662
mRNA
_6663
mRNA
_6664
15028
15029
15030
15031
15032
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.1
-2.3
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.0
-1.7
-0.3
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.1
-1.3
+0.1
-0.3
growth on ricinoleic acid
YNB Glucose
-0.2
+0.1
-0.7
+0.1
-1.0
auxotrophy
YNB Glucose
-0.0
+0.4
-0.3
+0.0
-1.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.4
-0.2
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.2
-0.5
-0.2
-0.3
growth on ypd
YPD
-0.6
-0.1
-0.2
+0.4
-0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.1
-0.5
-0.1
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.1
-0.5
-0.0
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.1
-0.2
+0.3
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.2
-1.3
-0.4
+1.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
+0.2
+0.2
+0.0
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.6
+0.0
-0.7
-0.4
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.2
-0.5
+0.2
+0.2
growth on oleic acid
YNB Glucose
-0.2
-0.0
+0.1
+0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
-0.3
+0.4
+0.0
auxotrophy
Dropout Complete
+0.2
+0.3
-0.3
+0.3
-0.2
growth on oleic acid
YNB Oleic Acid
-0.1
-0.0
+0.3
+0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
-0.5
+0.3
+0.9
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.0
+0.5
+0.6
+0.8
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