Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 15028 and 15029 are separated by 69 nucleotides15029 and 15030 are separated by 1441 nucleotides15030 and 15031 are separated by 456 nucleotides15031 and 15032 are separated by 186 nucleotides mRNA_6660: 15028 - KOG1342 Histone deacetylase complex, catalytic component RPD3, at 1,373,866 to 1,375,485 15028 mRNA_6661: 15029 - K11699 RDR, RDRP RNA-dependent RNA polymerase, at 1,375,555 to 1,377,901 15029 mRNA_6662: 15030 - HMMPfam-G-patch domain-PF01585,HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-G-patch domain profile.-PS50174,SMART-RNA recognition motif-SM00360,SMART-glycine rich nucleic binding domain-SM00443,SUPERFAMILY--SSF54928, at 1,379,343 to 1,382,272 15030 mRNA_6663: 15031 - Hypothetical Protein, at 1,382,729 to 1,383,844 15031 mRNA_6664: 15032 - K03165 TOP3 DNA topoisomerase III, at 1,384,031 to 1,388,134 15032
Group Condition mRNA_6660 mRNA_6661 mRNA_6662 mRNA_6663 mRNA_6664
15028 15029 15030 15031 15032
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.1 -0.1 -2.3 +0.1 -0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.2 +0.0 -1.7 -0.3 -0.2
growth on ricinoleic acid YNB Ricinoleic Acid -0.2 -0.1 -1.3 +0.1 -0.3
growth on ricinoleic acid YNB Glucose -0.2 +0.1 -0.7 +0.1 -1.0
auxotrophy YNB Glucose -0.0 +0.4 -0.3 +0.0 -1.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 -0.4 -0.2 -0.2 -0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1 +0.2 -0.5 -0.2 -0.3
growth on ypd YPD -0.6 -0.1 -0.2 +0.4 -0.5
auxotrophy YNB Glucose 75mM Methionine -0.1 +0.1 -0.5 -0.1 -0.3
facs on lipid accumulation Sorted Low BODIPY Gate -0.1 -0.1 -0.5 -0.0 +0.2
growth on ricinoleic acid YNB Methylricinoleic Acid +0.0 -0.1 -0.2 +0.3 -0.5
facs on lipid accumulation Sorted High BODIPY Gate +0.0 +0.2 -1.3 -0.4 +1.0
ypd buoyancy 40 hrs No Buoyancy Separation -0.6 +0.2 +0.2 +0.0 -0.1
facs on lipid accumulation Sorted No BODIPY Gate +0.6 +0.0 -0.7 -0.4 +0.2
auxotrophy YNB Glucose 75mM Arginine -0.2 +0.2 -0.5 +0.2 +0.2
growth on oleic acid YNB Glucose -0.2 -0.0 +0.1 +0.3 -0.1
ypd buoyancy 40 hrs High Buoyancy +0.1 -0.1 -0.3 +0.4 +0.0
auxotrophy Dropout Complete +0.2 +0.3 -0.3 +0.3 -0.2
growth on oleic acid YNB Oleic Acid -0.1 -0.0 +0.3 +0.1 +0.2
ypd buoyancy 40 hrs Median Buoyancy +0.1 -0.0 -0.5 +0.3 +0.9
ypd buoyancy 40 hrs Low Buoyancy -0.0 +0.0 +0.5 +0.6 +0.8
remove
mRNA_6660
plot
remove
mRNA_6661
plot
remove
mRNA_6662
remove
mRNA_6663
plot
remove
mRNA_6664
plot