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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15029 and 15030 are separated by 1441 nucleotides
15030 and 15031 are separated by 456 nucleotides
15031 and 15032 are separated by 186 nucleotides
15032 and 15033 are separated by 1250 nucleotides
mRNA_6661: 15029 - K11699 RDR, RDRP RNA-dependent RNA polymerase, at 1,375,555 to 1,377,901
15029
mRNA_6662: 15030 - HMMPfam-G-patch domain-PF01585,HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-G-patch domain profile.-PS50174,SMART-RNA recognition motif-SM00360,SMART-glycine rich nucleic binding domain-SM00443,SUPERFAMILY--SSF54928, at 1,379,343 to 1,382,272
15030
mRNA_6663: 15031 - Hypothetical Protein, at 1,382,729 to 1,383,844
15031
mRNA_6664: 15032 - K03165 TOP3 DNA topoisomerase III, at 1,384,031 to 1,388,134
15032
mRNA_6665: 15033 - K01952 purL, PFAS phosphoribosylformylglycinamidine synthase, at 1,389,385 to 1,393,556
15033
Group
Condition
mRNA
_6661
mRNA
_6662
mRNA
_6663
mRNA
_6664
mRNA
_6665
15029
15030
15031
15032
15033
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-2.3
+0.1
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-1.7
-0.3
-0.2
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-1.3
+0.1
-0.3
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.7
-0.4
+0.2
-1.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.5
-0.2
-0.3
-0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-0.2
-0.2
-0.2
-0.5
growth on ricinoleic acid
YNB Glucose
+0.1
-0.7
+0.1
-1.0
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.2
+0.3
-0.5
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.5
-0.0
+0.2
-0.2
auxotrophy
YNB Glucose
+0.4
-0.3
+0.0
-1.1
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-1.3
-0.4
+1.0
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.5
-0.1
-0.3
+0.6
growth on ypd
YPD
-0.1
-0.2
+0.4
-0.5
+0.3
growth on oleic acid
YNB Oleic Acid
-0.0
+0.3
+0.1
+0.2
-0.5
growth on oleic acid
YNB Glucose
-0.0
+0.1
+0.3
-0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.2
+0.0
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.5
+0.2
+0.2
+0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.5
+0.3
+0.9
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.3
+0.4
+0.0
+0.8
auxotrophy
Dropout Complete
+0.3
-0.3
+0.3
-0.2
+0.8
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.5
+0.6
+0.8
+0.3
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