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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15030 and 15031 are separated by 456 nucleotides
15031 and 15032 are separated by 186 nucleotides
15032 and 15033 are separated by 1250 nucleotides
15033 and 15034 are separated by 228 nucleotides
mRNA_6662: 15030 - HMMPfam-G-patch domain-PF01585,HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-G-patch domain profile.-PS50174,SMART-RNA recognition motif-SM00360,SMART-glycine rich nucleic binding domain-SM00443,SUPERFAMILY--SSF54928, at 1,379,343 to 1,382,272
15030
mRNA_6663: 15031 - Hypothetical Protein, at 1,382,729 to 1,383,844
15031
mRNA_6664: 15032 - K03165 TOP3 DNA topoisomerase III, at 1,384,031 to 1,388,134
15032
mRNA_6665: 15033 - K01952 purL, PFAS phosphoribosylformylglycinamidine synthase, at 1,389,385 to 1,393,556
15033
mRNA_6666: 15034 - K18423 CSE1, CAS, XPO2 exportin-2 (importin alpha re-exporter), at 1,393,785 to 1,397,625
15034
Group
Condition
mRNA
_6662
mRNA
_6663
mRNA
_6664
mRNA
_6665
mRNA
_6666
15030
15031
15032
15033
15034
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-2.3
+0.1
-0.2
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.7
-0.3
-0.2
-0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
-0.4
+0.2
-1.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.3
+0.1
-0.3
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
-0.2
-0.3
-0.7
N.D.
growth on ricinoleic acid
YNB Glucose
-0.7
+0.1
-1.0
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.2
-0.2
-0.5
N.D.
auxotrophy
YNB Glucose
-0.3
+0.0
-1.1
+0.3
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.3
-0.5
-0.6
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-0.0
+0.2
-0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-1.3
-0.4
+1.0
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.5
-0.1
-0.3
+0.6
N.D.
growth on oleic acid
YNB Oleic Acid
+0.3
+0.1
+0.2
-0.5
N.D.
growth on ypd
YPD
-0.2
+0.4
-0.5
+0.3
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.0
-0.1
+0.1
N.D.
growth on oleic acid
YNB Glucose
+0.1
+0.3
-0.1
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.5
+0.2
+0.2
+0.5
N.D.
auxotrophy
Dropout Complete
-0.3
+0.3
-0.2
+0.8
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.5
+0.3
+0.9
+0.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.4
+0.0
+0.8
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.5
+0.6
+0.8
+0.3
N.D.
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