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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15036 and 15037 are separated by 168 nucleotides
15037 and 15038 are separated by 341 nucleotides
15038 and 15039 are separated by 828 nucleotides
15039 and 15040 are separated by 318 nucleotides
mRNA_6668: 15036 - K03509 POLH DNA polymerase eta, at 1,403,534 to 1,406,837
15036
mRNA_6669: 15037 - K03564 BCP, PRXQ, DOT5 peroxiredoxin Q/BCP, at 1,407,006 to 1,408,136
15037
mRNA_6670: 15038 - K03676 grxC, GLRX, GLRX2 glutaredoxin 3, at 1,408,478 to 1,409,380
15038
mRNA_6671: 15039 - K08331 ATG13 autophagy-related protein 13, at 1,410,209 to 1,413,905
15039
mRNA_6672: 15040 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 1,414,224 to 1,415,709
15040
Group
Condition
mRNA
_6668
mRNA
_6669
mRNA
_6670
mRNA
_6671
mRNA
_6672
15036
15037
15038
15039
15040
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.3
-1.0
-0.4
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.0
-0.9
-0.5
+0.0
growth on oleic acid
YNB Glucose
-0.2
-0.1
-0.5
-0.3
-0.4
growth on oleic acid
YNB Oleic Acid
-0.1
-0.3
-0.5
-0.2
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.1
-0.7
-0.3
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.1
-0.9
-0.3
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.2
-0.5
-0.6
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
-0.6
-0.2
+0.1
auxotrophy
YNB Glucose
+0.1
-0.3
-0.5
-0.2
+0.1
growth on ricinoleic acid
YNB Glucose
-0.3
+0.0
-0.2
-0.2
+0.0
auxotrophy
Dropout Complete
+0.1
-0.1
-0.6
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.2
+0.1
-0.2
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.2
-0.4
-0.3
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.1
-0.1
-0.8
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.2
-0.2
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.1
-0.1
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.2
+0.4
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.1
+0.2
-0.1
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.3
+0.1
+0.1
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.0
+0.0
+0.1
+0.2
growth on ypd
YPD
-0.1
-0.0
+0.2
-0.3
+0.7
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