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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15042 and 15043 are separated by 27 nucleotides
15043 and 15044 are separated by 126 nucleotides
15044 and 15045 are separated by 369 nucleotides
15045 and 15046 are separated by 392 nucleotides
mRNA_6674: 15042 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 1,418,030 to 1,419,199
15042
mRNA_6675: 15043 - Hypothetical Protein, at 1,419,227 to 1,419,845
15043
mRNA_6676: 15044 - KOG3138 Predicted N-acetyltransferase, at 1,419,972 to 1,420,806
15044
mRNA_6677: 15045 - Hypothetical Protein, at 1,421,176 to 1,421,967
15045
mRNA_6678: 15046 - KOG2533 Permease of the major facilitator superfamily, at 1,422,360 to 1,424,349
15046
Group
Condition
mRNA
_6674
mRNA
_6675
mRNA
_6676
mRNA
_6677
mRNA
_6678
15042
15043
15044
15045
15046
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.1
-0.2
-0.4
-0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.1
-0.1
+0.1
-1.8
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.1
+0.2
-0.1
-1.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.1
-0.1
-0.3
-0.9
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.1
-0.6
+0.4
-0.7
auxotrophy
Dropout Complete
+0.2
+0.0
-0.1
-0.3
-0.8
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.1
-0.2
+0.3
-1.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.0
+0.2
-0.0
-0.9
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
+0.0
-0.1
-0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.0
+0.1
-0.1
-0.6
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.0
+0.1
-0.1
-0.1
auxotrophy
YNB Glucose
+0.5
+0.1
-0.0
-0.2
-0.8
auxotrophy
YNB Glucose 75mM Methionine
+0.8
+0.1
+0.1
-0.5
-0.8
growth on oleic acid
YNB Oleic Acid
-0.1
+0.1
-0.0
+0.2
-0.4
growth on ricinoleic acid
YNB Glucose
+0.1
-0.0
+0.2
+0.3
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.2
-0.1
-0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.1
+0.2
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
-0.1
+0.2
-0.1
-0.5
growth on oleic acid
YNB Glucose
+0.1
+0.0
-0.1
+0.5
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.9
-0.2
+0.6
-0.4
-0.5
growth on ypd
YPD
+1.0
-0.0
-0.1
-0.1
-0.0
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