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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15044 and 15045 are separated by 369 nucleotides
15045 and 15046 are separated by 392 nucleotides
15046 and 15047 are separated by 240 nucleotides
15047 and 15048 are separated by 389 nucleotides
mRNA_6676: 15044 - KOG3138 Predicted N-acetyltransferase, at 1,419,972 to 1,420,806
15044
mRNA_6677: 15045 - Hypothetical Protein, at 1,421,176 to 1,421,967
15045
mRNA_6678: 15046 - KOG2533 Permease of the major facilitator superfamily, at 1,422,360 to 1,424,349
15046
mRNA_6679: 15047 - K05389 KCNKF potassium channel subfamily K, other eukaryote, at 1,424,590 to 1,427,114
15047
mRNA_6680: 15048 - K11430 EZH2 histone-lysine N-methyltransferase EZH2, at 1,427,504 to 1,431,076
15048
Group
Condition
mRNA
_6676
mRNA
_6677
mRNA
_6678
mRNA
_6679
mRNA
_6680
15044
15045
15046
15047
15048
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.1
-1.8
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.4
-0.8
-0.0
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.5
-0.8
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.3
-0.9
-0.0
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.1
-1.2
-0.2
+0.0
auxotrophy
YNB Glucose
-0.0
-0.2
-0.8
-0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.0
-0.9
-0.1
-0.2
auxotrophy
Dropout Complete
-0.1
-0.3
-0.8
+0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.3
-1.1
+0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
-0.6
-0.0
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
+0.4
-0.7
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
-0.4
-0.5
-0.2
-0.0
growth on ricinoleic acid
YNB Glucose
+0.2
+0.3
-0.5
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.1
-0.5
+0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.2
+0.1
+0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
-0.1
+0.1
-0.1
growth on ypd
YPD
-0.1
-0.1
-0.0
-0.0
+0.1
growth on oleic acid
YNB Glucose
-0.1
+0.5
-0.3
+0.0
-0.2
growth on oleic acid
YNB Oleic Acid
-0.0
+0.2
-0.4
+0.1
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.2
-0.0
-0.0
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.1
+0.1
+0.3
+0.4
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