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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15045 and 15046 are separated by 392 nucleotides
15046 and 15047 are separated by 240 nucleotides
15047 and 15048 are separated by 389 nucleotides
15048 and 15049 are separated by 735 nucleotides
mRNA_6677: 15045 - Hypothetical Protein, at 1,421,176 to 1,421,967
15045
mRNA_6678: 15046 - KOG2533 Permease of the major facilitator superfamily, at 1,422,360 to 1,424,349
15046
mRNA_6679: 15047 - K05389 KCNKF potassium channel subfamily K, other eukaryote, at 1,424,590 to 1,427,114
15047
mRNA_6680: 15048 - K11430 EZH2 histone-lysine N-methyltransferase EZH2, at 1,427,504 to 1,431,076
15048
mRNA_6681: 15049 - Hypothetical Protein, at 1,431,812 to 1,432,661
15049
Group
Condition
mRNA
_6677
mRNA
_6678
mRNA
_6679
mRNA
_6680
mRNA
_6681
15045
15046
15047
15048
15049
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-1.8
+0.1
-0.3
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-1.2
-0.2
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.9
-0.0
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.5
-0.2
-0.0
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.9
-0.1
-0.2
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.5
-0.8
-0.2
-0.1
+0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.8
-0.0
-0.3
+0.2
auxotrophy
YNB Glucose
-0.2
-0.8
-0.1
-0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.6
-0.0
-0.3
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.1
+0.1
-0.2
-0.9
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-1.1
+0.2
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.5
+0.0
-0.1
-0.1
auxotrophy
Dropout Complete
-0.3
-0.8
+0.1
-0.0
+0.3
growth on ricinoleic acid
YNB Glucose
+0.3
-0.5
-0.3
-0.2
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
+0.1
-0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.0
-0.0
-0.1
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.7
+0.3
-0.1
+0.2
growth on ypd
YPD
-0.1
-0.0
-0.0
+0.1
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.1
+0.3
+0.4
-0.4
growth on oleic acid
YNB Oleic Acid
+0.2
-0.4
+0.1
+0.0
+0.3
growth on oleic acid
YNB Glucose
+0.5
-0.3
+0.0
-0.2
+0.4
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