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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15047 and 15048 are separated by 389 nucleotides
15048 and 15049 are separated by 735 nucleotides
15049 and 15050 are separated by 1002 nucleotides
15050 and 15051 are separated by 207 nucleotides
mRNA_6679: 15047 - K05389 KCNKF potassium channel subfamily K, other eukaryote, at 1,424,590 to 1,427,114
15047
mRNA_6680: 15048 - K11430 EZH2 histone-lysine N-methyltransferase EZH2, at 1,427,504 to 1,431,076
15048
mRNA_6681: 15049 - Hypothetical Protein, at 1,431,812 to 1,432,661
15049
mRNA_6682: 15050 - HMMPfam-Roadblock/LC7 domain-PF03259,SMART-Roadblock/LC7 domain-SM00960,SUPERFAMILY--SSF103196, at 1,433,664 to 1,434,403
15050
mRNA_6683: 15051 - HMMPfam-Thioesterase-like superfamily-PF13622, at 1,434,611 to 1,435,976
15051
Group
Condition
mRNA
_6679
mRNA
_6680
mRNA
_6681
mRNA
_6682
mRNA
_6683
15047
15048
15049
15050
15051
growth on ricinoleic acid
YNB Glucose
-0.3
-0.2
-0.0
N.D.
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.2
+0.0
N.D.
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.2
-0.9
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.3
-0.3
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.3
-0.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.1
-0.1
N.D.
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.0
-0.2
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.1
-0.1
N.D.
-0.2
auxotrophy
YNB Glucose
-0.1
-0.1
-0.0
N.D.
-0.1
growth on oleic acid
YNB Glucose
+0.0
-0.2
+0.4
N.D.
-0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.3
+0.2
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.0
-0.3
N.D.
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.1
-0.0
N.D.
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
-0.1
N.D.
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.1
-0.0
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.1
+0.4
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.1
+0.2
N.D.
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.4
-0.4
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
+0.1
+0.0
+0.3
N.D.
-0.3
auxotrophy
Dropout Complete
+0.1
-0.0
+0.3
N.D.
-0.0
growth on ypd
YPD
-0.0
+0.1
+0.3
N.D.
+0.0
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