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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15049 and 15050 are separated by 1002 nucleotides
15050 and 15051 are separated by 207 nucleotides
15051 and 15052 are separated by 166 nucleotides
15052 and 15053 are separated by 420 nucleotides
mRNA_6681: 15049 - Hypothetical Protein, at 1,431,812 to 1,432,661
15049
mRNA_6682: 15050 - HMMPfam-Roadblock/LC7 domain-PF03259,SMART-Roadblock/LC7 domain-SM00960,SUPERFAMILY--SSF103196, at 1,433,664 to 1,434,403
15050
mRNA_6683: 15051 - HMMPfam-Thioesterase-like superfamily-PF13622, at 1,434,611 to 1,435,976
15051
mRNA_6684: 15052 - K04464 MAPK7 mitogen-activated protein kinase 7, at 1,436,143 to 1,438,277
15052
mRNA_6685: 15053 - Hypothetical Protein, at 1,438,698 to 1,439,183
15053
Group
Condition
mRNA
_6681
mRNA
_6682
mRNA
_6683
mRNA
_6684
mRNA
_6685
15049
15050
15051
15052
15053
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
-0.3
-0.4
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
N.D.
-0.5
-0.3
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.2
N.D.
-0.2
+0.0
-0.7
growth on ricinoleic acid
YNB Glucose
-0.0
N.D.
-0.5
+0.2
-0.3
growth on oleic acid
YNB Glucose
+0.4
N.D.
-0.5
-0.0
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
N.D.
-0.2
-0.0
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.9
N.D.
+0.3
-0.0
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
N.D.
-0.1
-0.3
+0.2
auxotrophy
YNB Glucose
-0.0
N.D.
-0.1
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
N.D.
-0.1
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
N.D.
+0.2
+0.0
-0.2
auxotrophy
Dropout Complete
+0.3
N.D.
-0.0
+0.2
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
N.D.
-0.4
-0.4
+0.4
ypd buoyancy
40 hrs High Buoyancy
-0.0
N.D.
+0.0
-0.3
+0.2
growth on oleic acid
YNB Oleic Acid
+0.3
N.D.
-0.3
-0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
N.D.
-0.3
-0.2
+0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.4
N.D.
-0.1
-0.0
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
N.D.
-0.1
-0.2
+0.8
growth on ypd
YPD
+0.3
N.D.
+0.0
-0.3
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
-0.1
+0.1
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
-0.0
+0.1
+0.4
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