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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15052 and 15053 are separated by 420 nucleotides
15053 and 15054 are separated by 484 nucleotides
15054 and 15055 are separated by 430 nucleotides
15055 and 15056 are separated by 286 nucleotides
mRNA_6684: 15052 - K04464 MAPK7 mitogen-activated protein kinase 7, at 1,436,143 to 1,438,277
15052
mRNA_6685: 15053 - Hypothetical Protein, at 1,438,698 to 1,439,183
15053
mRNA_6686: 15054 - K02875 RP-L14e, RPL14 large subunit ribosomal protein L14e, at 1,439,668 to 1,440,386
15054
mRNA_6687: 15055 - BLAST Wings apart-like protein [Xanthophyllomyces dendrorhous], at 1,440,817 to 1,442,910
15055
mRNA_6688: 15056 - BLAST Wings apart-like protein [Ceraceosorus bombacis], at 1,443,197 to 1,445,162
15056
Group
Condition
mRNA
_6684
mRNA
_6685
mRNA
_6686
mRNA
_6687
mRNA
_6688
15052
15053
15054
15055
15056
auxotrophy
Dropout Complete
+0.2
-0.7
N.D.
-0.3
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.0
N.D.
-0.4
+0.2
growth on oleic acid
YNB Glucose
-0.0
-0.4
N.D.
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.1
N.D.
+0.3
-0.3
growth on ricinoleic acid
YNB Glucose
+0.2
-0.3
N.D.
-0.5
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.7
N.D.
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.2
N.D.
+0.2
-0.2
growth on ypd
YPD
-0.3
+0.1
N.D.
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.2
N.D.
+0.4
-0.2
auxotrophy
YNB Glucose
-0.0
-0.2
N.D.
+0.6
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.0
N.D.
+0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.5
N.D.
-0.9
+0.7
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.2
N.D.
+0.5
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.4
N.D.
-0.4
+0.7
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.2
N.D.
+0.5
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.3
N.D.
+0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.8
N.D.
-0.7
+0.7
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
N.D.
+0.4
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.2
N.D.
+0.5
+0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.4
N.D.
+0.8
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.2
N.D.
+0.5
+1.2
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