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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15053 and 15054 are separated by 484 nucleotides
15054 and 15055 are separated by 430 nucleotides
15055 and 15056 are separated by 286 nucleotides
15056 and 15057 are separated by 157 nucleotides
mRNA_6685: 15053 - Hypothetical Protein, at 1,438,698 to 1,439,183
15053
mRNA_6686: 15054 - K02875 RP-L14e, RPL14 large subunit ribosomal protein L14e, at 1,439,668 to 1,440,386
15054
mRNA_6687: 15055 - BLAST Wings apart-like protein [Xanthophyllomyces dendrorhous], at 1,440,817 to 1,442,910
15055
mRNA_6688: 15056 - BLAST Wings apart-like protein [Ceraceosorus bombacis], at 1,443,197 to 1,445,162
15056
mRNA_6689: 15057 - Hypothetical Protein, at 1,445,320 to 1,449,896
15057
Group
Condition
mRNA
_6685
mRNA
_6686
mRNA
_6687
mRNA
_6688
mRNA
_6689
15053
15054
15055
15056
15057
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
+0.3
-0.3
-1.6
auxotrophy
Dropout Complete
-0.7
N.D.
-0.3
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
N.D.
+0.1
-0.1
-1.0
auxotrophy
YNB Glucose 75mM Arginine
-0.7
N.D.
+0.4
-0.1
-0.4
growth on ricinoleic acid
YNB Glucose
-0.3
N.D.
-0.5
+0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
N.D.
-0.4
+0.2
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
N.D.
+0.4
-0.2
-0.6
growth on oleic acid
YNB Glucose
-0.4
N.D.
+0.2
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
N.D.
+0.2
-0.2
-0.1
growth on ypd
YPD
+0.1
N.D.
+0.2
-0.2
-0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.3
N.D.
+0.1
-0.1
-0.3
auxotrophy
YNB Glucose
-0.2
N.D.
+0.6
-0.3
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.2
N.D.
+0.5
-0.0
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
N.D.
-0.9
+0.7
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
N.D.
-0.4
+0.7
-0.3
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
+0.4
+0.4
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.8
N.D.
-0.7
+0.7
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
N.D.
+0.5
+0.2
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
N.D.
+0.5
+0.5
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.4
N.D.
+0.8
+0.0
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
N.D.
+0.5
+1.2
-0.2
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