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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15056 and 15057 are separated by 157 nucleotides
15057 and 15058 are separated by 434 nucleotides
15058 and 15059 are separated by 595 nucleotides
15059 and 15060 are separated by 780 nucleotides
mRNA_6688: 15056 - BLAST Wings apart-like protein [Ceraceosorus bombacis], at 1,443,197 to 1,445,162
15056
mRNA_6689: 15057 - Hypothetical Protein, at 1,445,320 to 1,449,896
15057
mRNA_6690: 15058 - KOG4776 Uncharacterized conserved protein BCNT, at 1,450,331 to 1,454,298
15058
mRNA_6691: 15059 - KOG3010 Methyltransferase, at 1,454,894 to 1,456,156
15059
mRNA_6692: 15060 - KOG3888 Gamma-butyrobetaine,2-oxoglutarate dioxygenase, at 1,456,937 to 1,457,982
15060
Group
Condition
mRNA
_6688
mRNA
_6689
mRNA
_6690
mRNA
_6691
mRNA
_6692
15056
15057
15058
15059
15060
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-1.6
+0.1
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-1.0
-0.1
+0.1
N.D.
growth on ypd
YPD
-0.2
-0.4
+0.0
-0.3
N.D.
auxotrophy
YNB Glucose
-0.3
-0.0
+0.0
-0.4
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.4
+0.1
-0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.3
-0.0
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.6
+0.0
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.1
+0.0
-0.3
N.D.
auxotrophy
Dropout Complete
-0.2
-0.1
+0.0
-0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.3
+0.0
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.2
+0.1
-0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.7
-0.1
-0.2
-0.6
N.D.
growth on oleic acid
YNB Oleic Acid
+0.4
-0.4
+0.1
-0.3
N.D.
growth on oleic acid
YNB Glucose
-0.2
+0.2
+0.0
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.2
+0.0
-0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.2
-0.1
+0.1
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.3
+0.0
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.7
-0.3
+0.0
+0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.7
-0.1
-0.1
+0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
+0.3
+0.1
+0.3
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+1.2
-0.2
+0.0
+0.1
N.D.
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