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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15057 and 15058 are separated by 434 nucleotides
15058 and 15059 are separated by 595 nucleotides
15059 and 15060 are separated by 780 nucleotides
15060 and 15061 are separated by 252 nucleotides
mRNA_6689: 15057 - Hypothetical Protein, at 1,445,320 to 1,449,896
15057
mRNA_6690: 15058 - KOG4776 Uncharacterized conserved protein BCNT, at 1,450,331 to 1,454,298
15058
mRNA_6691: 15059 - KOG3010 Methyltransferase, at 1,454,894 to 1,456,156
15059
mRNA_6692: 15060 - KOG3888 Gamma-butyrobetaine,2-oxoglutarate dioxygenase, at 1,456,937 to 1,457,982
15060
mRNA_6693: 15061 - HMMPfam-Afadin- and alpha -actinin-Binding-PF11559, at 1,458,235 to 1,460,963
15061
Group
Condition
mRNA
_6689
mRNA
_6690
mRNA
_6691
mRNA
_6692
mRNA
_6693
15057
15058
15059
15060
15061
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.2
-0.6
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.6
+0.1
+0.2
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.0
-0.1
+0.1
N.D.
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.0
-0.2
N.D.
-0.1
growth on ypd
YPD
-0.4
+0.0
-0.3
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.1
-0.2
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.0
-0.2
N.D.
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.0
+0.1
N.D.
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.0
+0.1
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.0
-0.3
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.1
+0.1
N.D.
-0.1
auxotrophy
YNB Glucose
-0.0
+0.0
-0.4
N.D.
+0.2
growth on oleic acid
YNB Oleic Acid
-0.4
+0.1
-0.3
N.D.
+0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.1
-0.1
N.D.
+0.0
growth on ricinoleic acid
YNB Glucose
-0.1
+0.1
-0.1
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.0
-0.1
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
+0.0
+0.2
N.D.
+0.5
auxotrophy
Dropout Complete
-0.1
+0.0
-0.2
N.D.
+0.4
growth on oleic acid
YNB Glucose
+0.2
+0.0
-0.1
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.0
-0.1
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.1
+0.3
N.D.
-0.1
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