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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15061 and 15062 are separated by 218 nucleotides
15062 and 15063 are separated by 1364 nucleotides
15063 and 15064 are separated by 319 nucleotides
15064 and 15065 are separated by 540 nucleotides
mRNA_6693: 15061 - HMMPfam-Afadin- and alpha -actinin-Binding-PF11559, at 1,458,235 to 1,460,963
15061
mRNA_6694: 15062 - Hypothetical Protein, at 1,461,182 to 1,464,230
15062
mRNA_6695: 15063 - K01045 PON arylesterase / paraoxonase, at 1,465,595 to 1,467,254
15063
mRNA_6696: 15064 - KOG3519 Invasion-inducing protein TIAM1/CDC24 and related RhoGEF GTPases, at 1,467,574 to 1,471,494
15064
mRNA_6697: 15065 - K07188 LIPE, HSL hormone-sensitive lipase, at 1,472,035 to 1,475,787
15065
Group
Condition
mRNA
_6693
mRNA
_6694
mRNA
_6695
mRNA
_6696
mRNA
_6697
15061
15062
15063
15064
15065
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
N.D.
-0.3
-0.4
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
N.D.
+0.0
-0.3
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.0
N.D.
-0.2
-0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.0
N.D.
-0.2
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
-0.5
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
N.D.
-0.4
+0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
-0.0
-0.0
-0.1
growth on oleic acid
YNB Glucose
+0.1
N.D.
-0.0
-0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
N.D.
+0.1
+0.0
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
N.D.
+0.3
+0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
N.D.
+0.1
+0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
N.D.
+0.2
-0.1
+0.3
growth on oleic acid
YNB Oleic Acid
+0.4
N.D.
-0.0
+0.0
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.0
N.D.
+0.0
-0.1
+0.2
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
+0.2
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
N.D.
-0.4
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.0
N.D.
+0.1
+0.0
+0.1
auxotrophy
Dropout Complete
+0.4
N.D.
+0.0
-0.2
+0.2
auxotrophy
YNB Glucose
+0.2
N.D.
+0.3
-0.1
+0.1
growth on ypd
YPD
+0.1
N.D.
+0.4
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
N.D.
+0.1
-0.1
+0.3
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