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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15064 and 15065 are separated by 540 nucleotides
15065 and 15066 are separated by 350 nucleotides
15066 and 15067 are separated by 378 nucleotides
15067 and 15068 are separated by 341 nucleotides
mRNA_6696: 15064 - KOG3519 Invasion-inducing protein TIAM1/CDC24 and related RhoGEF GTPases, at 1,467,574 to 1,471,494
15064
mRNA_6697: 15065 - K07188 LIPE, HSL hormone-sensitive lipase, at 1,472,035 to 1,475,787
15065
mRNA_6698: 15066 - K00819 rocD, OAT ornithine--oxo-acid transaminase, at 1,476,138 to 1,478,780
15066
mRNA_6699: 15067 - HMMPfam-Peptidase family M20/M25/M40-PF01546,HMMPfam-Peptidase dimerisation domain-PF07687,PIRSF--PIRSF037226,SUPERFAMILY--SSF53187,SUPERFAMILY--SSF55031,TIGRFAM-amidohydrolases amidohydrolase-TIGR01891, at 1,479,159 to 1,480,660
15067
mRNA_6700: 15068 - HMMPfam-Amidohydrolase family-PF07969,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 1,481,002 to 1,482,828
15068
Group
Condition
mRNA
_6696
mRNA
_6697
mRNA
_6698
mRNA
_6699
mRNA
_6700
15064
15065
15066
15067
15068
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.3
-0.4
-1.2
+0.8
growth on ypd
YPD
+0.2
-0.0
-0.3
+0.0
-0.4
auxotrophy
YNB Glucose
-0.1
+0.1
-0.1
-0.5
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.2
+0.0
-0.4
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+0.1
-0.3
+0.4
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.1
-0.2
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.1
-0.2
-0.7
+0.4
growth on ricinoleic acid
YNB Glucose
+0.0
-0.1
+0.3
-0.5
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.1
-0.7
-0.3
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.1
-0.5
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.2
-0.5
-0.5
+0.6
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.1
-0.5
+0.4
+0.2
growth on oleic acid
YNB Oleic Acid
+0.0
-0.2
+0.1
+0.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.2
+0.0
-0.3
+0.3
auxotrophy
Dropout Complete
-0.2
+0.2
-0.0
-0.0
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.1
+0.0
-0.3
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.1
-0.2
+0.3
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.0
-0.2
+0.4
+0.5
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.0
+0.3
+0.8
-0.1
growth on oleic acid
YNB Glucose
-0.1
+0.1
+0.2
+0.4
+0.7
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.3
+0.4
+0.5
+0.3
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