Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 15066 and 15067 are separated by 378 nucleotides15067 and 15068 are separated by 341 nucleotides15068 and 15069 are separated by 151 nucleotides15069 and 15070 are separated by 729 nucleotides mRNA_6698: 15066 - K00819 rocD, OAT ornithine--oxo-acid transaminase, at 1,476,138 to 1,478,780 15066 mRNA_6699: 15067 - HMMPfam-Peptidase family M20/M25/M40-PF01546,HMMPfam-Peptidase dimerisation domain-PF07687,PIRSF--PIRSF037226,SUPERFAMILY--SSF53187,SUPERFAMILY--SSF55031,TIGRFAM-amidohydrolases amidohydrolase-TIGR01891, at 1,479,159 to 1,480,660 15067 mRNA_6700: 15068 - HMMPfam-Amidohydrolase family-PF07969,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 1,481,002 to 1,482,828 15068 mRNA_6701: 15069 - K08192 DAL MFS transporter, ACS family, allantoate permease, at 1,482,980 to 1,485,101 15069 mRNA_6702: 15070 - K08192 DAL MFS transporter, ACS family, allantoate permease, at 1,485,831 to 1,488,005 15070
Group Condition mRNA_6698 mRNA_6699 mRNA_6700 mRNA_6701 mRNA_6702
15066 15067 15068 15069 15070
growth on ricinoleic acid YNB Ricinoleic Acid -0.5 +0.2 +0.1 -1.1 +0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.4 -1.2 +0.8 +0.1 -0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.2 -0.7 +0.4 -0.0 -0.2
growth on ricinoleic acid YNB Methylricinoleic Acid +0.0 -0.3 +0.3 -0.5 -0.2
ypd buoyancy 40 hrs High Buoyancy -0.5 +0.4 +0.2 -0.5 -0.1
auxotrophy YNB Glucose 75mM Arginine -0.2 -0.3 +0.1 -0.0 -0.0
growth on ypd YPD -0.3 +0.0 -0.4 +0.4 -0.2
auxotrophy YNB Glucose -0.1 -0.5 +0.1 +0.1 -0.0
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.7 -0.3 +0.6 +0.2 -0.2
facs on lipid accumulation Sorted Low BODIPY Gate -0.3 +0.4 -0.0 -0.1 -0.2
ypd buoyancy 40 hrs Low Buoyancy -0.2 +0.3 +0.2 -0.5 -0.2
auxotrophy YNB Glucose 75mM Methionine +0.0 -0.4 -0.1 +0.3 +0.1
facs on lipid accumulation Sorted High BODIPY Gate +0.0 -0.3 +0.3 -0.2 +0.1
growth on ricinoleic acid YNB Glucose +0.3 -0.5 +0.1 +0.1 -0.1
ypd buoyancy 40 hrs Median Buoyancy -0.2 +0.4 +0.5 -0.6 -0.1
growth on oleic acid YNB Oleic Acid +0.1 +0.1 +0.2 +0.0 -0.1
ypd buoyancy 40 hrs No Buoyancy Separation +0.3 +0.8 -0.1 -0.7 +0.1
auxotrophy Dropout Complete -0.0 -0.0 +0.2 +0.3 -0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.5 -0.5 +0.6 +0.8 +0.1
growth on oleic acid YNB Glucose +0.2 +0.4 +0.7 -0.2 -0.1
facs on lipid accumulation Sorted No BODIPY Gate +0.4 +0.5 +0.3 +0.0 +0.0
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