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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15066 and 15067 are separated by 378 nucleotides
15067 and 15068 are separated by 341 nucleotides
15068 and 15069 are separated by 151 nucleotides
15069 and 15070 are separated by 729 nucleotides
mRNA_6698: 15066 - K00819 rocD, OAT ornithine--oxo-acid transaminase, at 1,476,138 to 1,478,780
15066
mRNA_6699: 15067 - HMMPfam-Peptidase family M20/M25/M40-PF01546,HMMPfam-Peptidase dimerisation domain-PF07687,PIRSF--PIRSF037226,SUPERFAMILY--SSF53187,SUPERFAMILY--SSF55031,TIGRFAM-amidohydrolases amidohydrolase-TIGR01891, at 1,479,159 to 1,480,660
15067
mRNA_6700: 15068 - HMMPfam-Amidohydrolase family-PF07969,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 1,481,002 to 1,482,828
15068
mRNA_6701: 15069 - K08192 DAL MFS transporter, ACS family, allantoate permease, at 1,482,980 to 1,485,101
15069
mRNA_6702: 15070 - K08192 DAL MFS transporter, ACS family, allantoate permease, at 1,485,831 to 1,488,005
15070
Group
Condition
mRNA
_6698
mRNA
_6699
mRNA
_6700
mRNA
_6701
mRNA
_6702
15066
15067
15068
15069
15070
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
+0.2
+0.1
-1.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-1.2
+0.8
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.7
+0.4
-0.0
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.3
+0.3
-0.5
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.5
+0.4
+0.2
-0.5
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.3
+0.1
-0.0
-0.0
growth on ypd
YPD
-0.3
+0.0
-0.4
+0.4
-0.2
auxotrophy
YNB Glucose
-0.1
-0.5
+0.1
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.7
-0.3
+0.6
+0.2
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.4
-0.0
-0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.3
+0.2
-0.5
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.4
-0.1
+0.3
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.3
+0.3
-0.2
+0.1
growth on ricinoleic acid
YNB Glucose
+0.3
-0.5
+0.1
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.4
+0.5
-0.6
-0.1
growth on oleic acid
YNB Oleic Acid
+0.1
+0.1
+0.2
+0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.8
-0.1
-0.7
+0.1
auxotrophy
Dropout Complete
-0.0
-0.0
+0.2
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
-0.5
+0.6
+0.8
+0.1
growth on oleic acid
YNB Glucose
+0.2
+0.4
+0.7
-0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.5
+0.3
+0.0
+0.0
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