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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15067 and 15068 are separated by 341 nucleotides
15068 and 15069 are separated by 151 nucleotides
15069 and 15070 are separated by 729 nucleotides
15070 and 15071 are separated by 332 nucleotides
mRNA_6699: 15067 - HMMPfam-Peptidase family M20/M25/M40-PF01546,HMMPfam-Peptidase dimerisation domain-PF07687,PIRSF--PIRSF037226,SUPERFAMILY--SSF53187,SUPERFAMILY--SSF55031,TIGRFAM-amidohydrolases amidohydrolase-TIGR01891, at 1,479,159 to 1,480,660
15067
mRNA_6700: 15068 - HMMPfam-Amidohydrolase family-PF07969,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 1,481,002 to 1,482,828
15068
mRNA_6701: 15069 - K08192 DAL MFS transporter, ACS family, allantoate permease, at 1,482,980 to 1,485,101
15069
mRNA_6702: 15070 - K08192 DAL MFS transporter, ACS family, allantoate permease, at 1,485,831 to 1,488,005
15070
mRNA_6703: 15071 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1,488,338 to 1,490,366
15071
Group
Condition
mRNA
_6699
mRNA
_6700
mRNA
_6701
mRNA
_6702
mRNA
_6703
15067
15068
15069
15070
15071
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.7
+0.4
-0.0
-0.2
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.3
-0.5
-0.2
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.3
-0.2
+0.1
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.1
-1.1
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.2
+0.8
+0.1
-0.2
-0.1
growth on ricinoleic acid
YNB Glucose
-0.5
+0.1
+0.1
-0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.1
-0.0
-0.0
-0.1
auxotrophy
YNB Glucose
-0.5
+0.1
+0.1
-0.0
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.1
+0.3
+0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.2
-0.5
-0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.2
-0.5
-0.1
-0.0
growth on ypd
YPD
+0.0
-0.4
+0.4
-0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.4
+0.5
-0.6
-0.1
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.8
-0.1
-0.7
+0.1
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
-0.0
-0.1
-0.2
+0.1
growth on oleic acid
YNB Oleic Acid
+0.1
+0.2
+0.0
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.6
+0.2
-0.2
+0.1
auxotrophy
Dropout Complete
-0.0
+0.2
+0.3
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
+0.6
+0.8
+0.1
-0.2
growth on oleic acid
YNB Glucose
+0.4
+0.7
-0.2
-0.1
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
+0.3
+0.0
+0.0
+0.1
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