Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 15070 and 15071 are separated by 332 nucleotides15071 and 15072 are separated by 99 nucleotides15072 and 15073 are separated by 260 nucleotides15073 and 15074 are separated by 1860 nucleotides mRNA_6702: 15070 - K08192 DAL MFS transporter, ACS family, allantoate permease, at 1,485,831 to 1,488,005 15070 mRNA_6703: 15071 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1,488,338 to 1,490,366 15071 mRNA_6704: 15072 - HMMPfam-Peptidase family M20/M25/M40-PF01546,HMMPfam-Peptidase dimerisation domain-PF07687,SUPERFAMILY--SSF53187,SUPERFAMILY--SSF55031,TIGRFAM-amidohydrolases amidohydrolase-TIGR01891, at 1,490,466 to 1,492,340 15072 mRNA_6705: 15073 - K11227 PBS2 mitogen-activated protein kinase kinase, at 1,492,601 to 1,495,154 15073 mRNA_6706: 15074 - K16261 YAT yeast amino acid transporter, at 1,497,015 to 1,499,228 15074
Group Condition mRNA_6702 mRNA_6703 mRNA_6704 mRNA_6705 mRNA_6706
15070 15071 15072 15073 15074
auxotrophy YNB Glucose 75mM Methionine +0.1 -0.0 -0.2 N.D. -1.2
auxotrophy YNB Glucose 75mM Arginine -0.0 -0.1 -0.4 N.D. -0.8
auxotrophy YNB Glucose -0.0 +0.0 -0.3 N.D. -1.0
auxotrophy Dropout Complete -0.1 +0.1 -0.1 N.D. -0.7
ypd buoyancy 40 hrs No Buoyancy Separation +0.1 +0.0 -0.4 N.D. -0.4
growth on ypd YPD -0.2 +0.1 -0.2 N.D. -0.4
growth on ricinoleic acid YNB Methylricinoleic Acid -0.2 -0.2 -0.0 N.D. -0.0
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.2 -0.5 -0.1 N.D. +0.5
growth on oleic acid YNB Glucose -0.1 +0.0 -0.1 N.D. -0.1
ypd buoyancy 40 hrs High Buoyancy -0.1 -0.0 +0.0 N.D. -0.0
growth on oleic acid YNB Oleic Acid -0.1 +0.2 -0.1 N.D. -0.2
growth on ricinoleic acid YNB Glucose -0.1 -0.0 -0.2 N.D. +0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.2 -0.1 -0.1 N.D. +0.3
growth on ricinoleic acid YNB Ricinoleic Acid +0.2 -0.2 -0.0 N.D. -0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.1 -0.2 -0.3 N.D. +0.4
ypd buoyancy 40 hrs Low Buoyancy -0.2 -0.1 +0.1 N.D. +0.2
ypd buoyancy 40 hrs Median Buoyancy -0.1 -0.0 -0.1 N.D. +0.3
facs on lipid accumulation Sorted High BODIPY Gate +0.1 -0.6 -0.1 N.D. +0.9
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.2 +0.1 +0.0 N.D. +0.8
facs on lipid accumulation Sorted Low BODIPY Gate -0.2 +0.1 +0.3 N.D. +0.7
facs on lipid accumulation Sorted No BODIPY Gate +0.0 +0.1 +0.2 N.D. +1.0
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