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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15070 and 15071 are separated by 332 nucleotides
15071 and 15072 are separated by 99 nucleotides
15072 and 15073 are separated by 260 nucleotides
15073 and 15074 are separated by 1860 nucleotides
mRNA_6702: 15070 - K08192 DAL MFS transporter, ACS family, allantoate permease, at 1,485,831 to 1,488,005
15070
mRNA_6703: 15071 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1,488,338 to 1,490,366
15071
mRNA_6704: 15072 - HMMPfam-Peptidase family M20/M25/M40-PF01546,HMMPfam-Peptidase dimerisation domain-PF07687,SUPERFAMILY--SSF53187,SUPERFAMILY--SSF55031,TIGRFAM-amidohydrolases amidohydrolase-TIGR01891, at 1,490,466 to 1,492,340
15072
mRNA_6705: 15073 - K11227 PBS2 mitogen-activated protein kinase kinase, at 1,492,601 to 1,495,154
15073
mRNA_6706: 15074 - K16261 YAT yeast amino acid transporter, at 1,497,015 to 1,499,228
15074
Group
Condition
mRNA
_6702
mRNA
_6703
mRNA
_6704
mRNA
_6705
mRNA
_6706
15070
15071
15072
15073
15074
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.0
-0.2
N.D.
-1.2
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.1
-0.4
N.D.
-0.8
auxotrophy
YNB Glucose
-0.0
+0.0
-0.3
N.D.
-1.0
auxotrophy
Dropout Complete
-0.1
+0.1
-0.1
N.D.
-0.7
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.0
-0.4
N.D.
-0.4
growth on ypd
YPD
-0.2
+0.1
-0.2
N.D.
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.2
-0.0
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.5
-0.1
N.D.
+0.5
growth on oleic acid
YNB Glucose
-0.1
+0.0
-0.1
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.0
+0.0
N.D.
-0.0
growth on oleic acid
YNB Oleic Acid
-0.1
+0.2
-0.1
N.D.
-0.2
growth on ricinoleic acid
YNB Glucose
-0.1
-0.0
-0.2
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.1
-0.1
N.D.
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.2
-0.0
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.2
-0.3
N.D.
+0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.1
+0.1
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.0
-0.1
N.D.
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.6
-0.1
N.D.
+0.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.1
+0.0
N.D.
+0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.1
+0.3
N.D.
+0.7
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.1
+0.2
N.D.
+1.0
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