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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15072 and 15073 are separated by 260 nucleotides
15073 and 15074 are separated by 1860 nucleotides
15074 and 15075 are separated by 199 nucleotides
15075 and 15076 are separated by 823 nucleotides
mRNA_6704: 15072 - HMMPfam-Peptidase family M20/M25/M40-PF01546,HMMPfam-Peptidase dimerisation domain-PF07687,SUPERFAMILY--SSF53187,SUPERFAMILY--SSF55031,TIGRFAM-amidohydrolases amidohydrolase-TIGR01891, at 1,490,466 to 1,492,340
15072
mRNA_6705: 15073 - K11227 PBS2 mitogen-activated protein kinase kinase, at 1,492,601 to 1,495,154
15073
mRNA_6706: 15074 - K16261 YAT yeast amino acid transporter, at 1,497,015 to 1,499,228
15074
mRNA_6707: 15075 - KOG3750 Inositol phospholipid synthesis protein, Scs3p, at 1,499,428 to 1,503,895
15075
mRNA_6708: 15076 - KOG3743 Recombination signal binding protein-J kappa(CBF1, Su(H), HS2NF5), at 1,504,719 to 1,508,015
15076
Group
Condition
mRNA
_6704
mRNA
_6705
mRNA
_6706
mRNA
_6707
mRNA
_6708
15072
15073
15074
15075
15076
auxotrophy
YNB Glucose 75mM Methionine
-0.2
N.D.
-1.2
-0.4
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.4
N.D.
-0.8
-0.4
-0.1
auxotrophy
YNB Glucose
-0.3
N.D.
-1.0
-0.3
+0.0
auxotrophy
Dropout Complete
-0.1
N.D.
-0.7
-0.4
+0.3
growth on ypd
YPD
-0.2
N.D.
-0.4
-0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
N.D.
-0.4
+0.2
-0.0
growth on oleic acid
YNB Glucose
-0.1
N.D.
-0.1
-0.1
-0.1
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
-0.2
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
-0.2
N.D.
+0.1
+0.0
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
N.D.
-0.0
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
N.D.
+0.4
-0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
N.D.
-0.0
+0.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
N.D.
-0.1
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
N.D.
+0.5
-0.3
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
+0.3
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
+0.3
-0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
+0.2
+0.2
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
N.D.
+0.9
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
N.D.
+0.8
-0.0
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
N.D.
+0.7
-0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
N.D.
+1.0
-0.1
+0.3
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