Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 15072 and 15073 are separated by 260 nucleotides15073 and 15074 are separated by 1860 nucleotides15074 and 15075 are separated by 199 nucleotides15075 and 15076 are separated by 823 nucleotides mRNA_6704: 15072 - HMMPfam-Peptidase family M20/M25/M40-PF01546,HMMPfam-Peptidase dimerisation domain-PF07687,SUPERFAMILY--SSF53187,SUPERFAMILY--SSF55031,TIGRFAM-amidohydrolases amidohydrolase-TIGR01891, at 1,490,466 to 1,492,340 15072 mRNA_6705: 15073 - K11227 PBS2 mitogen-activated protein kinase kinase, at 1,492,601 to 1,495,154 15073 mRNA_6706: 15074 - K16261 YAT yeast amino acid transporter, at 1,497,015 to 1,499,228 15074 mRNA_6707: 15075 - KOG3750 Inositol phospholipid synthesis protein, Scs3p, at 1,499,428 to 1,503,895 15075 mRNA_6708: 15076 - KOG3743 Recombination signal binding protein-J kappa(CBF1, Su(H), HS2NF5), at 1,504,719 to 1,508,015 15076
Group Condition mRNA_6704 mRNA_6705 mRNA_6706 mRNA_6707 mRNA_6708
15072 15073 15074 15075 15076
auxotrophy YNB Glucose 75mM Methionine -0.2 N.D. -1.2 -0.4 -0.0
auxotrophy YNB Glucose 75mM Arginine -0.4 N.D. -0.8 -0.4 -0.1
auxotrophy YNB Glucose -0.3 N.D. -1.0 -0.3 +0.0
auxotrophy Dropout Complete -0.1 N.D. -0.7 -0.4 +0.3
growth on ypd YPD -0.2 N.D. -0.4 -0.1 -0.1
ypd buoyancy 40 hrs No Buoyancy Separation -0.4 N.D. -0.4 +0.2 -0.0
growth on oleic acid YNB Glucose -0.1 N.D. -0.1 -0.1 -0.1
growth on oleic acid YNB Oleic Acid -0.1 N.D. -0.2 -0.1 -0.1
growth on ricinoleic acid YNB Glucose -0.2 N.D. +0.1 +0.0 -0.1
growth on ricinoleic acid YNB Methylricinoleic Acid -0.0 N.D. -0.0 -0.1 -0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.3 N.D. +0.4 -0.1 -0.1
ypd buoyancy 40 hrs High Buoyancy +0.0 N.D. -0.0 +0.2 -0.1
growth on ricinoleic acid YNB Ricinoleic Acid -0.0 N.D. -0.1 +0.2 +0.0
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 N.D. +0.5 -0.3 -0.0
ypd buoyancy 40 hrs Median Buoyancy -0.1 N.D. +0.3 -0.0 +0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.1 N.D. +0.3 -0.0 +0.1
ypd buoyancy 40 hrs Low Buoyancy +0.1 N.D. +0.2 +0.2 -0.1
facs on lipid accumulation Sorted High BODIPY Gate -0.1 N.D. +0.9 -0.2 -0.0
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.0 N.D. +0.8 -0.0 +0.2
facs on lipid accumulation Sorted Low BODIPY Gate +0.3 N.D. +0.7 -0.1 +0.2
facs on lipid accumulation Sorted No BODIPY Gate +0.2 N.D. +1.0 -0.1 +0.3
remove
mRNA_6704
plot
remove
mRNA_6705
plot
remove
mRNA_6706
remove
mRNA_6707
plot
remove
mRNA_6708
plot