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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15075 and 15076 are separated by 823 nucleotides
15076 and 15077 are separated by 165 nucleotides
15077 and 15078 are separated by 1103 nucleotides
15078 and 15079 are separated by 550 nucleotides
mRNA_6707: 15075 - KOG3750 Inositol phospholipid synthesis protein, Scs3p, at 1,499,428 to 1,503,895
15075
mRNA_6708: 15076 - KOG3743 Recombination signal binding protein-J kappa(CBF1, Su(H), HS2NF5), at 1,504,719 to 1,508,015
15076
mRNA_6709: 15077 - BLAST recombination signal binding protein-J kappa [Kal..., at 1,508,181 to 1,509,469
15077
mRNA_6710: 15078 - SUPERFAMILY--SSF50685, at 1,510,573 to 1,512,987
15078
mRNA_6711: 15079 - Hypothetical Protein, at 1,513,538 to 1,514,008
15079
Group
Condition
mRNA
_6707
mRNA
_6708
mRNA
_6709
mRNA
_6710
mRNA
_6711
15075
15076
15077
15078
15079
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.0
-0.3
-1.0
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.1
-0.6
+0.3
-0.4
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.1
-0.3
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.0
+0.0
-0.2
-0.0
growth on oleic acid
YNB Glucose
-0.1
-0.1
-0.0
+0.4
-0.1
growth on ypd
YPD
-0.1
-0.1
+0.7
+0.3
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.0
-0.1
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.0
-0.2
+0.6
+0.4
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
+0.1
+0.6
-0.1
growth on ricinoleic acid
YNB Glucose
+0.0
-0.1
+0.5
+0.2
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.1
+0.5
+0.3
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.2
+0.4
-0.1
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.1
+0.4
+0.0
+0.4
auxotrophy
YNB Glucose
-0.3
+0.0
+0.4
+0.3
+0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.3
+0.4
-0.2
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.2
+0.2
+0.3
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.0
+0.3
+0.7
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.0
+0.3
+0.4
+0.7
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.1
+0.5
+0.7
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.1
+0.4
+0.7
+0.6
auxotrophy
Dropout Complete
-0.4
+0.3
+0.7
+0.3
+0.6
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