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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15077 and 15078 are separated by 1103 nucleotides
15078 and 15079 are separated by 550 nucleotides
15079 and 15080 are separated by 1028 nucleotides
15080 and 15081 are separated by 444 nucleotides
mRNA_6709: 15077 - BLAST recombination signal binding protein-J kappa [Kal..., at 1,508,181 to 1,509,469
15077
mRNA_6710: 15078 - SUPERFAMILY--SSF50685, at 1,510,573 to 1,512,987
15078
mRNA_6711: 15079 - Hypothetical Protein, at 1,513,538 to 1,514,008
15079
mRNA_6712: 15080 - Hypothetical Protein, at 1,515,037 to 1,516,123
15080
mRNA_6713: 15081 - HMMPfam-RTA1 like protein-PF04479, at 1,516,568 to 1,518,041
15081
Group
Condition
mRNA
_6709
mRNA
_6710
mRNA
_6711
mRNA
_6712
mRNA
_6713
15077
15078
15079
15080
15081
ypd buoyancy
40 hrs Low Buoyancy
-0.6
+0.3
-0.4
-0.9
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-1.0
+0.2
-0.3
+0.4
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.1
-0.1
-0.0
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.2
-0.0
-0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.2
+0.6
-0.5
-0.1
growth on ypd
YPD
+0.7
+0.3
-0.6
-0.0
+0.1
growth on oleic acid
YNB Glucose
-0.0
+0.4
-0.1
+0.4
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.4
+0.7
-0.5
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
-0.1
+0.5
+0.1
+0.2
auxotrophy
YNB Glucose
+0.4
+0.3
+0.6
-0.5
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.7
+0.4
-0.3
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.3
-0.2
+0.8
+0.4
growth on oleic acid
YNB Oleic Acid
+0.1
+0.6
-0.1
+0.4
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
+0.0
+0.4
+0.1
+0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.5
+0.7
+0.5
-0.2
+0.1
auxotrophy
Dropout Complete
+0.7
+0.3
+0.6
+0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
+0.3
-0.1
+0.8
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.6
+0.4
+0.8
+0.3
growth on ricinoleic acid
YNB Glucose
+0.5
+0.2
+0.1
+0.9
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.3
+0.3
+0.7
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.7
+0.6
+0.5
+0.3
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