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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15079 and 15080 are separated by 1028 nucleotides
15080 and 15081 are separated by 444 nucleotides
15081 and 15082 are separated by 929 nucleotides
15082 and 15083 are separated by 1958 nucleotides
mRNA_6711: 15079 - Hypothetical Protein, at 1,513,538 to 1,514,008
15079
mRNA_6712: 15080 - Hypothetical Protein, at 1,515,037 to 1,516,123
15080
mRNA_6713: 15081 - HMMPfam-RTA1 like protein-PF04479, at 1,516,568 to 1,518,041
15081
mRNA_6714: 15082 - HMMPfam-Inhibitor of Apoptosis domain-PF00653,ProSiteProfiles-BIR repeat profile.-PS50143,SMART-Baculoviral inhibition of apoptosis protein repeat-SM00238,SUPERFAMILY--SSF57924, at 1,518,971 to 1,519,735
15082
mRNA_6715: 15083 - K13989 DERL2_3 Derlin-2/3, at 1,521,694 to 1,522,877
15083
Group
Condition
mRNA
_6711
mRNA
_6712
mRNA
_6713
mRNA
_6714
mRNA
_6715
15079
15080
15081
15082
15083
ypd buoyancy
40 hrs Low Buoyancy
-0.4
-0.9
+0.0
N.D.
+0.1
growth on ypd
YPD
-0.6
-0.0
+0.1
N.D.
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.7
-0.5
-0.1
N.D.
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.0
-0.1
N.D.
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.2
-0.1
N.D.
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.6
-0.5
-0.1
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.5
-0.2
+0.1
N.D.
-0.3
growth on oleic acid
YNB Glucose
-0.1
+0.4
+0.2
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.3
+0.0
N.D.
-0.0
growth on oleic acid
YNB Oleic Acid
-0.1
+0.4
+0.2
N.D.
-0.4
auxotrophy
YNB Glucose
+0.6
-0.5
+0.3
N.D.
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.3
+0.4
N.D.
+0.1
auxotrophy
Dropout Complete
+0.6
+0.1
-0.1
N.D.
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.8
+0.1
N.D.
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
+0.1
+0.2
N.D.
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.8
+0.4
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
+0.1
+0.4
N.D.
+0.2
growth on ricinoleic acid
YNB Glucose
+0.1
+0.9
+0.2
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.8
+0.3
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.7
+0.4
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
+0.5
+0.3
N.D.
+0.4
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