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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15082 and 15083 are separated by 1958 nucleotides
15083 and 15084 are separated by 265 nucleotides
15084 and 15085 are separated by 415 nucleotides
15085 and 15086 are separated by 1322 nucleotides
mRNA_6714: 15082 - HMMPfam-Inhibitor of Apoptosis domain-PF00653,ProSiteProfiles-BIR repeat profile.-PS50143,SMART-Baculoviral inhibition of apoptosis protein repeat-SM00238,SUPERFAMILY--SSF57924, at 1,518,971 to 1,519,735
15082
mRNA_6715: 15083 - K13989 DERL2_3 Derlin-2/3, at 1,521,694 to 1,522,877
15083
mRNA_6716: 15084 - Hypothetical Protein, at 1,523,143 to 1,524,181
15084
mRNA_6717: 15085 - Hypothetical Protein, at 1,524,597 to 1,524,959
15085
mRNA_6718: 15086 - K13711 PI4K2 phosphatidylinositol 4-kinase type 2, at 1,526,282 to 1,529,015
15086
Group
Condition
mRNA
_6714
mRNA
_6715
mRNA
_6716
mRNA
_6717
mRNA
_6718
15082
15083
15084
15085
15086
growth on oleic acid
YNB Glucose
N.D.
-0.4
-0.6
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.4
-0.5
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.4
-0.6
N.D.
+0.2
auxotrophy
Dropout Complete
N.D.
-0.0
-0.6
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.3
-0.3
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.0
-0.4
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
-0.4
N.D.
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.1
-0.4
N.D.
+0.4
auxotrophy
YNB Glucose
N.D.
-0.0
-0.0
N.D.
+0.0
growth on ypd
YPD
N.D.
+0.0
-0.1
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.2
-0.4
N.D.
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
+0.2
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
+0.1
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.0
+0.4
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.2
+0.3
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
+0.3
N.D.
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.1
+0.5
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.2
+0.6
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
+0.9
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.3
+0.8
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.4
+0.8
N.D.
+0.1
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