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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15085 and 15086 are separated by 1322 nucleotides
15086 and 15087 are separated by 994 nucleotides
15087 and 15088 are separated by 759 nucleotides
15088 and 15089 are separated by 123 nucleotides
mRNA_6717: 15085 - Hypothetical Protein, at 1,524,597 to 1,524,959
15085
mRNA_6718: 15086 - K13711 PI4K2 phosphatidylinositol 4-kinase type 2, at 1,526,282 to 1,529,015
15086
mRNA_6719: 15087 - Hypothetical Protein, at 1,530,010 to 1,530,905
15087
mRNA_6720: 15088 - K11293 HIRA, HIR1 protein HIRA/HIR1, at 1,531,665 to 1,535,330
15088
mRNA_6721: 15089 - K14554 UTP21, WDR36 U3 small nucleolar RNA-associated protein 21, at 1,535,454 to 1,538,954
15089
Group
Condition
mRNA
_6717
mRNA
_6718
mRNA
_6719
mRNA
_6720
mRNA
_6721
15085
15086
15087
15088
15089
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
-0.4
-0.6
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.1
-0.1
-0.6
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.2
+0.1
-0.9
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.4
+0.2
-1.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.2
-0.4
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
-0.0
-0.6
N.D.
auxotrophy
YNB Glucose
N.D.
+0.0
-0.1
-0.4
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
-0.1
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.2
-0.2
-0.5
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.0
+0.0
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
-0.1
-0.4
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.2
+0.2
-0.7
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
+0.0
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.1
-0.2
-0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.3
+0.5
-0.9
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
+0.1
-0.2
N.D.
auxotrophy
Dropout Complete
N.D.
+0.1
+0.2
-0.2
N.D.
growth on oleic acid
YNB Glucose
N.D.
-0.1
-0.1
+0.3
N.D.
growth on ypd
YPD
N.D.
+0.1
+0.2
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
+0.2
+0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
+0.0
+0.3
N.D.
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