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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15096 and 15097 are separated by 291 nucleotides
15097 and 15098 are separated by 589 nucleotides
15098 and 15099 are separated by 1573 nucleotides
15099 and 15100 are separated by 503 nucleotides
mRNA_6728: 15096 - K14309 NUP93, NIC96 nuclear pore complex protein Nup93, at 5,048 to 8,579
15096
mRNA_6729: 15097 - HMMPfam-Putative GTPase activating protein for Arf-PF01412,PRINTS-HIV Rev interacting protein signature-PR00405,ProSiteProfiles-ARF GTPase-activating proteins domain profile.-PS50115,SMART-Putative GTP-ase activating proteins for the small GTPase, ARF-SM00105,SUPERFAMILY--SSF57863, at 8,871 to 11,490
15097
mRNA_6730: 15098 - K00326 E1.6.2.2 cytochrome-b5 reductase, at 12,080 to 14,125
15098
mRNA_6731: 15099 - BLAST putative Ran-binding protein [Rhizoctonia solani 123E], at 15,699 to 18,601
15099
mRNA_6732: 15100 - KOG1530 Rhodanese-related sulfurtransferase, at 19,105 to 19,903
15100
Group
Condition
mRNA
_6728
mRNA
_6729
mRNA
_6730
mRNA
_6731
mRNA
_6732
15096
15097
15098
15099
15100
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.3
+0.1
+0.1
-0.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.8
-0.5
-0.2
-0.2
N.D.
auxotrophy
Dropout Complete
-0.7
-0.3
-0.3
-0.2
N.D.
growth on ricinoleic acid
YNB Glucose
-1.4
-0.2
+0.0
+0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.3
-0.1
+0.1
+0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.8
-0.4
+0.1
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.3
-0.2
-0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.8
+0.2
-0.1
-0.1
N.D.
growth on oleic acid
YNB Glucose
-0.3
-0.2
+0.0
-0.2
N.D.
auxotrophy
YNB Glucose
-0.1
-0.2
-0.2
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.1
-0.2
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.4
-0.0
-0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.3
-0.0
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.4
-0.1
-0.2
+0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.3
+0.3
-0.4
N.D.
growth on oleic acid
YNB Oleic Acid
+0.4
-0.1
+0.2
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.6
+0.2
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.5
+0.1
+0.1
N.D.
growth on ypd
YPD
+0.9
-0.2
-0.0
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.7
+0.2
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.1
+0.3
+0.1
N.D.
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