Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 15097 and 15098 are separated by 589 nucleotides15098 and 15099 are separated by 1573 nucleotides15099 and 15100 are separated by 503 nucleotides15100 and 15101 are separated by 1060 nucleotides mRNA_6729: 15097 - HMMPfam-Putative GTPase activating protein for Arf-PF01412,PRINTS-HIV Rev interacting protein signature-PR00405,ProSiteProfiles-ARF GTPase-activating proteins domain profile.-PS50115,SMART-Putative GTP-ase activating proteins for the small GTPase, ARF-SM00105,SUPERFAMILY--SSF57863, at 8,871 to 11,490 15097 mRNA_6730: 15098 - K00326 E1.6.2.2 cytochrome-b5 reductase, at 12,080 to 14,125 15098 mRNA_6731: 15099 - BLAST putative Ran-binding protein [Rhizoctonia solani 123E], at 15,699 to 18,601 15099 mRNA_6732: 15100 - KOG1530 Rhodanese-related sulfurtransferase, at 19,105 to 19,903 15100 mRNA_6733: 15101 - KOG4412 26S proteasome regulatory complex, subunit PSMD10, at 20,964 to 21,791 15101
Group Condition mRNA_6729 mRNA_6730 mRNA_6731 mRNA_6732 mRNA_6733
15097 15098 15099 15100 15101
auxotrophy Dropout Complete -0.3 -0.3 -0.2 N.D. +0.1
auxotrophy YNB Glucose 75mM Arginine -0.3 -0.2 -0.2 N.D. +0.0
ypd buoyancy 40 hrs Low Buoyancy +0.1 -0.2 -0.1 N.D. -0.3
growth on ypd YPD -0.2 -0.0 +0.1 N.D. -0.3
auxotrophy YNB Glucose 75mM Methionine -0.5 -0.2 -0.2 N.D. +0.4
auxotrophy YNB Glucose -0.2 -0.2 -0.1 N.D. +0.1
growth on oleic acid YNB Glucose -0.2 +0.0 -0.2 N.D. +0.1
growth on ricinoleic acid YNB Ricinoleic Acid -0.4 +0.1 +0.0 N.D. +0.1
ypd buoyancy 40 hrs Median Buoyancy -0.1 -0.2 +0.1 N.D. +0.2
facs on lipid accumulation Sorted High BODIPY Gate +0.2 -0.1 -0.1 N.D. +0.0
facs on lipid accumulation Sorted No BODIPY Gate +0.3 -0.0 +0.1 N.D. -0.3
ypd buoyancy 40 hrs High Buoyancy +0.4 -0.0 -0.2 N.D. -0.0
ypd buoyancy 40 hrs No Buoyancy Separation +0.3 +0.3 -0.4 N.D. -0.1
growth on oleic acid YNB Oleic Acid -0.1 +0.2 +0.0 N.D. +0.1
facs on lipid accumulation Sorted Low BODIPY Gate +0.1 +0.1 -0.0 N.D. +0.1
growth on ricinoleic acid YNB Glucose -0.2 +0.0 +0.1 N.D. +0.5
growth on ricinoleic acid YNB Methylricinoleic Acid -0.1 +0.1 +0.3 N.D. +0.4
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.5 +0.1 +0.1 N.D. +0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.1 +0.3 +0.1 N.D. +0.4
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.6 +0.2 -0.1 N.D. +0.4
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.7 +0.2 -0.0 N.D. +0.3
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