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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15098 and 15099 are separated by 1573 nucleotides
15099 and 15100 are separated by 503 nucleotides
15100 and 15101 are separated by 1060 nucleotides
15101 and 15102 are separated by 133 nucleotides
mRNA_6730: 15098 - K00326 E1.6.2.2 cytochrome-b5 reductase, at 12,080 to 14,125
15098
mRNA_6731: 15099 - BLAST putative Ran-binding protein [Rhizoctonia solani 123E], at 15,699 to 18,601
15099
mRNA_6732: 15100 - KOG1530 Rhodanese-related sulfurtransferase, at 19,105 to 19,903
15100
mRNA_6733: 15101 - KOG4412 26S proteasome regulatory complex, subunit PSMD10, at 20,964 to 21,791
15101
mRNA_6734: 15102 - Hypothetical Protein, at 21,925 to 24,629
15102
Group
Condition
mRNA
_6730
mRNA
_6731
mRNA
_6732
mRNA
_6733
mRNA
_6734
15098
15099
15100
15101
15102
growth on ypd
YPD
-0.0
+0.1
N.D.
-0.3
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.1
N.D.
-0.3
+0.2
auxotrophy
Dropout Complete
-0.3
-0.2
N.D.
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.1
N.D.
+0.1
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.1
N.D.
-0.3
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.1
N.D.
+0.0
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.0
N.D.
+0.1
-0.5
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.2
N.D.
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.2
N.D.
+0.0
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.1
N.D.
+0.4
-0.5
auxotrophy
YNB Glucose
-0.2
-0.1
N.D.
+0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.0
N.D.
+0.1
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.4
N.D.
-0.1
+0.2
growth on oleic acid
YNB Glucose
+0.0
-0.2
N.D.
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.2
N.D.
+0.4
+0.1
growth on oleic acid
YNB Oleic Acid
+0.2
+0.0
N.D.
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.0
N.D.
+0.3
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.1
N.D.
+0.2
+0.1
growth on ricinoleic acid
YNB Glucose
+0.0
+0.1
N.D.
+0.5
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.1
N.D.
+0.4
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.3
N.D.
+0.4
-0.2
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