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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15100 and 15101 are separated by 1060 nucleotides
15101 and 15102 are separated by 133 nucleotides
15102 and 15103 are separated by 312 nucleotides
15103 and 15104 are separated by 166 nucleotides
mRNA_6732: 15100 - KOG1530 Rhodanese-related sulfurtransferase, at 19,105 to 19,903
15100
mRNA_6733: 15101 - KOG4412 26S proteasome regulatory complex, subunit PSMD10, at 20,964 to 21,791
15101
mRNA_6734: 15102 - Hypothetical Protein, at 21,925 to 24,629
15102
mRNA_6735: 15103 - Hypothetical Protein, at 24,942 to 26,366
15103
mRNA_6736: 15104 - K11527 K11527 two-component system, sensor histidine kinase and response regulator, at 26,533 to 28,608
15104
Group
Condition
mRNA
_6732
mRNA
_6733
mRNA
_6734
mRNA
_6735
mRNA
_6736
15100
15101
15102
15103
15104
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.3
-0.1
-0.3
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.0
-0.1
-0.2
-0.1
growth on ypd
YPD
N.D.
-0.3
-0.3
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
-0.6
+0.2
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.1
+0.2
+0.1
-0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.3
+0.2
+0.2
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
-0.5
+0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.0
+0.1
+0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.1
-0.2
+0.0
+0.2
growth on ricinoleic acid
YNB Glucose
N.D.
+0.5
-0.3
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.4
-0.5
+0.2
+0.2
auxotrophy
Dropout Complete
N.D.
+0.1
+0.1
+0.2
+0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
+0.1
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.3
-0.3
+0.2
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.4
-0.2
+0.2
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
-0.1
+0.5
+0.0
auxotrophy
YNB Glucose
N.D.
+0.1
+0.1
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.4
-0.2
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.0
+0.3
+0.2
+0.2
growth on oleic acid
YNB Glucose
N.D.
+0.1
+0.2
+0.3
+0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.4
+0.1
-0.0
+0.2
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