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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15104 and 15105 are separated by 719 nucleotides
15105 and 15106 are separated by 90 nucleotides
15106 and 15107 are separated by 253 nucleotides
15107 and 15108 are separated by 1819 nucleotides
mRNA_6736: 15104 - K11527 K11527 two-component system, sensor histidine kinase and response regulator, at 26,533 to 28,608
15104
mRNA_6737: 15105 - KOG0516 Dystonin, GAS (Growth-arrest-specific protein), and related proteins, at 29,328 to 32,887
15105
mRNA_6738: 15106 - Hypothetical Protein, at 32,978 to 33,241
15106
mRNA_6739: 15107 - BLAST polysaccharide lyase family 14 protein [Mixia osm..., at 33,495 to 35,587
15107
mRNA_6740: 15108 - Interpro Dynactin subunit p22, at 37,407 to 38,257
15108
Group
Condition
mRNA
_6736
mRNA
_6737
mRNA
_6738
mRNA
_6739
mRNA
_6740
15104
15105
15106
15107
15108
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.7
-0.4
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.2
-1.5
-0.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.0
-1.0
+0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
-0.5
+0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.0
-0.4
+0.3
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.3
-0.6
+0.3
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.1
-0.1
+0.4
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
+0.0
-0.1
+0.2
N.D.
growth on oleic acid
YNB Oleic Acid
+0.0
+0.1
+0.2
+0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.0
+0.3
+0.4
N.D.
growth on oleic acid
YNB Glucose
+0.2
+0.1
+0.5
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.2
+0.1
-0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.0
+0.1
+0.3
N.D.
auxotrophy
YNB Glucose
+0.2
-0.1
+0.8
-0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.1
+0.2
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.3
+0.6
-0.1
N.D.
auxotrophy
Dropout Complete
+0.0
-0.2
+1.3
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.4
+0.0
+0.6
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.2
+1.5
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.3
+2.2
-0.0
N.D.
growth on ypd
YPD
+0.1
+0.3
+1.7
+0.1
N.D.
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