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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15109 and 15110 are separated by 628 nucleotides
15110 and 15111 are separated by 94 nucleotides
15111 and 15112 are separated by 127 nucleotides
15112 and 15113 are separated by 107 nucleotides
mRNA_6741: 15109 - K01657 trpE anthranilate synthase component I, at 38,468 to 40,696
15109
mRNA_6742: 15110 - Hypothetical Protein, at 41,325 to 41,801
15110
mRNA_6743: 15111 - K06671 STAG1_2, SCC3, IRR1 cohesin complex subunit SA-1/2, at 41,896 to 46,673
15111
mRNA_6744: 15112 - KOG0813 Glyoxylase, at 46,801 to 48,312
15112
mRNA_6745: 15113 - HMMPfam-Uncharacterised conserved protein (DUF2315)-PF10231, at 48,420 to 49,672
15113
Group
Condition
mRNA
_6741
mRNA
_6742
mRNA
_6743
mRNA
_6744
mRNA
_6745
15109
15110
15111
15112
15113
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.3
-0.5
-0.8
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.5
-0.3
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.7
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.8
-0.0
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.8
+0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.4
-0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.3
+0.0
-0.1
growth on ypd
YPD
N.D.
N.D.
-1.0
+0.4
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.7
+0.2
+0.4
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.0
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.5
+0.3
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.4
+0.1
+0.3
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.0
+0.1
+0.2
auxotrophy
Dropout Complete
N.D.
N.D.
-0.1
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.9
+0.7
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.3
+0.5
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.2
+0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.2
+0.1
+0.1
auxotrophy
YNB Glucose
N.D.
N.D.
-0.2
+0.3
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.7
+0.7
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+1.2
+0.1
+0.1
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