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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15112 and 15113 are separated by 107 nucleotides
15113 and 15114 are separated by 117 nucleotides
15114 and 15115 are separated by 146 nucleotides
15115 and 15116 are separated by 487 nucleotides
mRNA_6744: 15112 - KOG0813 Glyoxylase, at 46,801 to 48,312
15112
mRNA_6745: 15113 - HMMPfam-Uncharacterised conserved protein (DUF2315)-PF10231, at 48,420 to 49,672
15113
mRNA_6746: 15114 - KOG3381 Uncharacterized conserved protein, at 49,790 to 50,693
15114
mRNA_6747: 15115 - Hypothetical Protein, at 50,840 to 52,306
15115
mRNA_6748: 15116 - Hypothetical Protein, at 52,794 to 54,250
15116
Group
Condition
mRNA
_6744
mRNA
_6745
mRNA
_6746
mRNA
_6747
mRNA
_6748
15112
15113
15114
15115
15116
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.8
N.D.
-1.4
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.1
N.D.
-0.1
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.0
N.D.
-0.2
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.3
N.D.
-0.4
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.2
N.D.
+0.0
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
N.D.
-0.1
-0.0
auxotrophy
Dropout Complete
+0.1
+0.2
N.D.
-0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.1
N.D.
-0.0
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.1
N.D.
+0.0
+0.0
auxotrophy
YNB Glucose
+0.3
+0.5
N.D.
-0.4
-0.2
growth on ypd
YPD
+0.4
+0.4
N.D.
-0.1
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.0
N.D.
-0.1
+0.0
growth on oleic acid
YNB Glucose
+0.1
+0.2
N.D.
-0.2
+0.3
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
N.D.
+0.4
+0.1
growth on ricinoleic acid
YNB Glucose
+0.1
+0.2
N.D.
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
+0.1
N.D.
-0.3
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.4
N.D.
+0.3
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.1
N.D.
+0.2
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.1
N.D.
+0.4
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.7
+0.4
N.D.
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.7
+0.6
N.D.
-0.2
+0.2
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