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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15118 and 15119 are separated by 77 nucleotides
15119 and 15120 are separated by 219 nucleotides
15120 and 15121 are separated by 1012 nucleotides
15121 and 15122 are separated by 188 nucleotides
mRNA_6750: 15118 - SUPERFAMILY--SSF47473, at 56,227 to 57,172
15118
mRNA_6751: 15119 - K10578 UBE2J1, NCUBE1, UBC6 ubiquitin-conjugating enzyme E2 J1, at 57,250 to 58,945
15119
mRNA_6752: 15120 - Hypothetical Protein, at 59,165 to 59,914
15120
mRNA_6753: 15121 - K00999 CDIPT CDP-diacylglycerol--inositol 3-phosphatidyltransferase, at 60,927 to 62,479
15121
mRNA_6754: 15122 - K15542 PFS2 polyadenylation factor subunit 2, at 62,668 to 65,062
15122
Group
Condition
mRNA
_6750
mRNA
_6751
mRNA
_6752
mRNA
_6753
mRNA
_6754
15118
15119
15120
15121
15122
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.2
-1.0
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.0
-0.4
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.1
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.4
+0.1
N.D.
N.D.
auxotrophy
Dropout Complete
+0.1
+0.0
-0.5
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.2
-0.4
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.1
-0.1
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.2
-0.4
-0.0
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.2
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose
+0.2
-0.1
-0.2
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.3
+0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.0
-0.0
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.0
+0.3
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.0
+0.2
N.D.
N.D.
growth on ypd
YPD
-0.2
+0.3
+0.3
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.3
-0.0
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.1
+0.5
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
+0.8
-0.7
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.1
+0.5
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.4
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.1
+0.5
N.D.
N.D.
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