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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15122 and 15123 are separated by 157 nucleotides
15123 and 15124 are separated by 121 nucleotides
15124 and 15125 are separated by 420 nucleotides
15125 and 15126 are separated by 803 nucleotides
mRNA_6754: 15122 - K15542 PFS2 polyadenylation factor subunit 2, at 62,668 to 65,062
15122
mRNA_6755: 15123 - K14319 RANGAP1 Ran GTPase-activating protein 1, at 65,220 to 66,894
15123
mRNA_6756: 15124 - K02906 RP-L3, MRPL3, rplC large subunit ribosomal protein L3, at 67,016 to 68,273
15124
mRNA_6757: 15125 - K11838 USP7, UBP15 ubiquitin carboxyl-terminal hydrolase 7, at 68,694 to 73,091
15125
mRNA_6758: 15126 - HMMPfam-Beta-lactamase-PF00144,SUPERFAMILY--SSF56601, at 73,895 to 75,434
15126
Group
Condition
mRNA
_6754
mRNA
_6755
mRNA
_6756
mRNA
_6757
mRNA
_6758
15122
15123
15124
15125
15126
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
N.D.
-0.8
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
N.D.
-0.3
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
N.D.
-1.4
+0.7
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
N.D.
-0.4
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
N.D.
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
N.D.
-0.3
+0.0
growth on oleic acid
YNB Glucose
N.D.
N.D.
N.D.
-0.2
-0.0
auxotrophy
YNB Glucose
N.D.
N.D.
N.D.
+0.2
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
N.D.
-0.4
+0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
N.D.
+0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
N.D.
-0.0
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
N.D.
+0.4
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
N.D.
+0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
N.D.
-0.1
+0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
N.D.
+0.0
+0.2
auxotrophy
Dropout Complete
N.D.
N.D.
N.D.
+0.6
-0.2
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
N.D.
+0.4
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
N.D.
+0.2
+0.3
growth on ypd
YPD
N.D.
N.D.
N.D.
-0.1
+0.6
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
N.D.
+0.9
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
N.D.
+0.9
-0.2
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