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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15124 and 15125 are separated by 420 nucleotides
15125 and 15126 are separated by 803 nucleotides
15126 and 15127 are separated by 393 nucleotides
15127 and 15128 are separated by 341 nucleotides
mRNA_6756: 15124 - K02906 RP-L3, MRPL3, rplC large subunit ribosomal protein L3, at 67,016 to 68,273
15124
mRNA_6757: 15125 - K11838 USP7, UBP15 ubiquitin carboxyl-terminal hydrolase 7, at 68,694 to 73,091
15125
mRNA_6758: 15126 - HMMPfam-Beta-lactamase-PF00144,SUPERFAMILY--SSF56601, at 73,895 to 75,434
15126
mRNA_6759: 15127 - HMMPfam-Beta-lactamase-PF00144,SUPERFAMILY--SSF56601, at 75,828 to 77,290
15127
mRNA_6760: 15128 - Hypothetical Protein, at 77,632 to 78,666
15128
Group
Condition
mRNA
_6756
mRNA
_6757
mRNA
_6758
mRNA
_6759
mRNA
_6760
15124
15125
15126
15127
15128
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-1.4
+0.7
-0.5
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.3
-0.3
-0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.8
+0.1
-0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.4
-0.1
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.3
+0.0
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
-0.3
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.4
+0.2
-0.2
N.D.
growth on oleic acid
YNB Glucose
N.D.
-0.2
-0.0
-0.0
N.D.
growth on ypd
YPD
N.D.
-0.1
+0.6
-0.7
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.0
+0.1
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
+0.1
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
+0.3
-0.4
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
+0.3
+0.0
N.D.
auxotrophy
YNB Glucose
N.D.
+0.2
-0.4
+0.5
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
-0.1
+0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.4
-0.4
+0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.0
+0.2
+0.3
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
+0.4
+0.0
+0.2
N.D.
auxotrophy
Dropout Complete
N.D.
+0.6
-0.2
+0.4
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
+0.9
-0.2
+0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.9
-0.2
+0.3
N.D.
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