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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15125 and 15126 are separated by 803 nucleotides
15126 and 15127 are separated by 393 nucleotides
15127 and 15128 are separated by 341 nucleotides
15128 and 15129 are separated by 304 nucleotides
mRNA_6757: 15125 - K11838 USP7, UBP15 ubiquitin carboxyl-terminal hydrolase 7, at 68,694 to 73,091
15125
mRNA_6758: 15126 - HMMPfam-Beta-lactamase-PF00144,SUPERFAMILY--SSF56601, at 73,895 to 75,434
15126
mRNA_6759: 15127 - HMMPfam-Beta-lactamase-PF00144,SUPERFAMILY--SSF56601, at 75,828 to 77,290
15127
mRNA_6760: 15128 - Hypothetical Protein, at 77,632 to 78,666
15128
mRNA_6761: 15129 - K00944 AK3 nucleoside-triphosphate--adenylate kinase, at 78,971 to 80,180
15129
Group
Condition
mRNA
_6757
mRNA
_6758
mRNA
_6759
mRNA
_6760
mRNA
_6761
15125
15126
15127
15128
15129
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.3
-0.2
N.D.
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.8
+0.1
-0.0
N.D.
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-1.4
+0.7
-0.5
N.D.
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
-0.1
-0.3
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.3
+0.1
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
+0.2
-0.2
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.0
-0.1
N.D.
-0.0
growth on ypd
YPD
-0.1
+0.6
-0.7
N.D.
-0.1
growth on oleic acid
YNB Glucose
-0.2
-0.0
-0.0
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.1
-0.2
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.3
-0.4
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.4
+0.3
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.1
+0.3
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.1
-0.2
N.D.
+0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.3
+0.0
N.D.
+0.1
auxotrophy
YNB Glucose
+0.2
-0.4
+0.5
N.D.
+0.2
growth on oleic acid
YNB Oleic Acid
+0.4
+0.0
+0.2
N.D.
-0.0
growth on ricinoleic acid
YNB Glucose
+0.9
-0.2
+0.2
N.D.
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.2
+0.3
N.D.
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.9
-0.2
+0.3
N.D.
-0.1
auxotrophy
Dropout Complete
+0.6
-0.2
+0.4
N.D.
+0.1
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