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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15139 and 15140 are separated by 841 nucleotides
15140 and 15141 are separated by 359 nucleotides
15141 and 15142 are separated by 169 nucleotides
15142 and 15143 are separated by 143 nucleotides
mRNA_6771: 15139 - Hypothetical Protein, at 100,994 to 101,449
15139
mRNA_6772: 15140 - KOG0202 Ca2+ transporting ATPase, at 102,291 to 102,787
15140
mRNA_6773: 15141 - HMMPfam-Cation transporter/ATPase, N-terminus-PF00690,SUPERFAMILY--SSF81665, at 103,147 to 103,439
15141
mRNA_6774: 15142 - HMMPfam-Mitochondrial ribosomal protein L31-PF09784, at 103,609 to 104,047
15142
mRNA_6775: 15143 - K14784 CMS1 protein CMS1, at 104,191 to 105,444
15143
Group
Condition
mRNA
_6771
mRNA
_6772
mRNA
_6773
mRNA
_6774
mRNA
_6775
15139
15140
15141
15142
15143
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
+0.2
N.D.
N.D.
-2.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-0.8
N.D.
N.D.
-1.3
growth on oleic acid
YNB Oleic Acid
+0.2
-0.3
N.D.
N.D.
-2.1
growth on oleic acid
YNB Glucose
+0.0
-0.1
N.D.
N.D.
-2.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
-0.5
N.D.
N.D.
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.7
N.D.
N.D.
-0.4
growth on ricinoleic acid
YNB Glucose
+0.2
+0.2
N.D.
N.D.
-1.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
-0.5
N.D.
N.D.
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.9
+0.1
N.D.
N.D.
+1.3
ypd buoyancy
40 hrs Median Buoyancy
-1.1
+0.6
N.D.
N.D.
+0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.6
+1.0
N.D.
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.3
N.D.
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.4
+0.2
N.D.
N.D.
+0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.7
N.D.
N.D.
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.7
-0.7
N.D.
N.D.
+0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.6
N.D.
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.7
N.D.
N.D.
+1.9
auxotrophy
Dropout Complete
+0.5
-1.4
N.D.
N.D.
+3.0
auxotrophy
YNB Glucose 75mM Arginine
+1.0
-0.3
N.D.
N.D.
+1.9
auxotrophy
YNB Glucose
+1.7
+0.2
N.D.
N.D.
+0.9
growth on ypd
YPD
+3.1
+1.1
N.D.
N.D.
-0.8
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