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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15140 and 15141 are separated by 359 nucleotides
15141 and 15142 are separated by 169 nucleotides
15142 and 15143 are separated by 143 nucleotides
15143 and 15144 are separated by 1221 nucleotides
mRNA_6772: 15140 - KOG0202 Ca2+ transporting ATPase, at 102,291 to 102,787
15140
mRNA_6773: 15141 - HMMPfam-Cation transporter/ATPase, N-terminus-PF00690,SUPERFAMILY--SSF81665, at 103,147 to 103,439
15141
mRNA_6774: 15142 - HMMPfam-Mitochondrial ribosomal protein L31-PF09784, at 103,609 to 104,047
15142
mRNA_6775: 15143 - K14784 CMS1 protein CMS1, at 104,191 to 105,444
15143
mRNA_6776: 15144 - KOG1183 N-acetylglucosaminyltransferase complex, subunit PIG-Q/GPI1, required for phosphatidylinositol biosynthesis, at 106,666 to 108,156
15144
Group
Condition
mRNA
_6772
mRNA
_6773
mRNA
_6774
mRNA
_6775
mRNA
_6776
15140
15141
15142
15143
15144
growth on oleic acid
YNB Oleic Acid
-0.3
N.D.
N.D.
-2.1
+0.2
growth on oleic acid
YNB Glucose
-0.1
N.D.
N.D.
-2.0
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.8
N.D.
N.D.
-1.3
+0.7
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
N.D.
N.D.
-2.0
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
N.D.
N.D.
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
N.D.
N.D.
-0.6
+0.3
growth on ricinoleic acid
YNB Glucose
+0.2
N.D.
N.D.
-1.1
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
N.D.
N.D.
-0.2
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
N.D.
N.D.
+0.7
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
N.D.
N.D.
-0.0
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+1.0
N.D.
N.D.
-0.3
-0.3
growth on ypd
YPD
+1.1
N.D.
N.D.
-0.8
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.6
N.D.
N.D.
+0.2
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
N.D.
N.D.
+0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.2
N.D.
N.D.
+0.8
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.7
N.D.
N.D.
+1.9
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.6
N.D.
N.D.
+0.5
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
N.D.
+1.3
-0.3
auxotrophy
YNB Glucose
+0.2
N.D.
N.D.
+0.9
+0.3
auxotrophy
Dropout Complete
-1.4
N.D.
N.D.
+3.0
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.3
N.D.
N.D.
+1.9
+0.1
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