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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15143 and 15144 are separated by 1221 nucleotides
15144 and 15145 are separated by 286 nucleotides
15145 and 15146 are separated by 3833 nucleotides
15146 and 15147 are separated by 67 nucleotides
mRNA_6775: 15143 - K14784 CMS1 protein CMS1, at 104,191 to 105,444
15143
mRNA_6776: 15144 - KOG1183 N-acetylglucosaminyltransferase complex, subunit PIG-Q/GPI1, required for phosphatidylinositol biosynthesis, at 106,666 to 108,156
15144
mRNA_6777: 15145 - Hypothetical Protein, at 108,443 to 109,222
15145
mRNA_6778: 15146 - K00565 RNMT mRNA (guanine-N7-)-methyltransferase, at 113,056 to 114,676
15146
mRNA_6779: 15147 - K10998 CSM3, SWI3 replication fork protection complex subunit Csm3/Swi3, at 114,744 to 115,894
15147
Group
Condition
mRNA
_6775
mRNA
_6776
mRNA
_6777
mRNA
_6778
mRNA
_6779
15143
15144
15145
15146
15147
ypd buoyancy
40 hrs No Buoyancy Separation
-2.0
+0.5
-1.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
+0.3
-1.5
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-2.1
+0.2
+0.4
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.3
-1.2
N.D.
N.D.
growth on oleic acid
YNB Glucose
-2.0
+0.2
+0.5
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.1
-0.6
N.D.
N.D.
growth on ypd
YPD
-0.8
+0.2
-0.1
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.4
-0.4
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.0
-0.7
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.3
+0.7
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.3
-0.3
-1.4
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.2
-0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-1.1
+0.3
+0.7
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.3
+0.5
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.7
-0.2
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.8
+0.0
-0.3
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.5
+0.0
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose
+0.9
+0.3
+0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+1.9
-0.2
+0.1
N.D.
N.D.
auxotrophy
Dropout Complete
+3.0
-0.2
-0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+1.9
+0.1
+0.9
N.D.
N.D.
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