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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15147 and 15148 are separated by 38 nucleotides
15148 and 15149 are separated by 250 nucleotides
15149 and 15150 are separated by 81 nucleotides
15150 and 15151 are separated by 240 nucleotides
mRNA_6779: 15147 - K10998 CSM3, SWI3 replication fork protection complex subunit Csm3/Swi3, at 114,744 to 115,894
15147
mRNA_6780: 15148 - KOG4288 Predicted oxidoreductase, at 115,933 to 117,029
15148
mRNA_6781: 15149 - Hypothetical Protein, at 117,280 to 117,859
15149
mRNA_6782: 15150 - HMMPfam-Man1-Src1p-C-terminal domain-PF09402,HMMPfam-HeH/LEM domain-PF12949, at 117,941 to 121,019
15150
mRNA_6783: 15151 - HMMPfam-Glutathione-dependent formaldehyde-activating enzyme-PF04828,SUPERFAMILY--SSF51316, at 121,260 to 121,958
15151
Group
Condition
mRNA
_6779
mRNA
_6780
mRNA
_6781
mRNA
_6782
mRNA
_6783
15147
15148
15149
15150
15151
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
N.D.
-0.4
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
N.D.
-0.6
+0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
N.D.
-0.3
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
N.D.
-0.5
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
N.D.
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
N.D.
-0.4
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
N.D.
-0.6
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
N.D.
-0.3
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
N.D.
-0.3
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
N.D.
-0.4
+0.2
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
N.D.
-0.2
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
N.D.
-0.1
-0.1
auxotrophy
YNB Glucose
N.D.
N.D.
N.D.
-0.5
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
N.D.
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
N.D.
+0.0
+0.0
auxotrophy
Dropout Complete
N.D.
N.D.
N.D.
-0.3
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
N.D.
+0.2
+0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
N.D.
+0.2
+0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
N.D.
+0.9
-0.2
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
N.D.
+0.5
+0.2
growth on ypd
YPD
N.D.
N.D.
N.D.
+0.9
+0.7
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